A repository of causal cellular signalling statement
SEEK ID: https://fairdomhub.org/studies/716
WP1: Creation of an integrated and curated cancer knowledge commons
Projects: Colosys
Study position:
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Created: 30th Jan 2020 at 13:00
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Projects: Kinetics on the move - Workshop 2016, CausalDB, COMBINE Multicellular Modelling, Colosys, NTNU Health Druglogics
Institutions: Kinetics on the move Workshop at HITS, Norwegian University of Science and Technology
https://orcid.org/0000-0003-4639-4431Expertise: Bioinformatics, Systems Biology, SBGN standard
The DrugLogics initiative comprises a number of different subprojects, all geared towards the development of personalised medicine, or precision medicine
Projects: CausalDB, Colosys, Crossover Research 2.0, NTNU Health Druglogics
Web page: http://druglogics.eu/
The COLOSYS project aims to develop a deeper understanding of colon cancer networks and convert them into computer models with which it will be better to predict response to treatment. The combination of computational, experimental and clinical testing will provide understanding of drug resistance mechanisms, and allow personalised treatment of colon cancer.
Programme: Druglogics
Public web page: http://www.colosys.org/
Organisms: Homo sapiens
The objectives of WP1 within the colosys project are:
- Produce resources of data and information that will be used for the identification of CC driver genes (WP2) and for the construction and configuration of computational models of cancer-related biological processes (WP2 and WP3)
- Integrate information from public patient data and cancer cell line data repositories with information from project specific clinical and model data
- Convert information from public cellular signalling databases ...
Submitter: Vasundra Toure
Studies: Deliverable 1.1: Draft curation guidelines for causal statements, Deliverable 1.3: Causal cellular signalling statement repository
Assays: Causal Extraction from Reactome, MI2CAST curation guidelines
Snapshots: No snapshots
Extraction of causalities from transcription and translation reactions from the Reactome pathway database.
Submitter: Vasundra Toure
Biological problem addressed: Biological Network Analysis
Investigation: WP1: Creation of an integrated and curated canc...
Organisms: No organisms
Models: No Models
SOPs: No SOPs
Data files: PSICQUIC registry
Snapshots: No snapshots
The causal interactions service provides the extracted data of causality from Reactome database.
Creator: Vasundra Toure
Submitter: Vasundra Toure
Investigations: WP1: Creation of an integrated and curated canc...
Studies: Deliverable 1.3: Causal cellular signalling sta...
Assays: Causal Extraction from Reactome