RNA levels for control amplicons and multiple clock genes in 2 WT (Col, Ws) and 5 clock mutants of Arabidopsis, in biological duplicates, from three conditions: Diurnal cycle (12L/12D), Extended night (DD), Extended light (LL), harvested every 2 hours. Numbers are in transcript copy per cell, obtained assuming 1 g FW contains 25000000 cells.
Comments:
Data from LD are concateneted with DD and LL for better visualization. Toc1-101 (col-0) gi-201 (col-0) prr7-3 prr9-1 (col-0) , lhy cca1 (ws) elf3-4
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Creator: Andrew Millar
Contributor: Andrew Millar
External Link
Matlab model (could not be represented in SBML) from publication with abstract:
Clock-regulated pathways coordinate the response of many developmental processes to changes in photoperiod and temperature. We model two of the best-understood clock output pathways in Arabidopsis, which control key regulators of flowering and elongation growth. In flowering, the model predicted regulatory links from the clock to CYCLING DOF FACTOR 1 (CDF1) and FLAVIN-BINDING, KELCH REPEAT, F-BOX 1 (FKF1) transcription.
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Creators: Andrew Millar, Daniel Seaton
Contributor: Andrew Millar
Model type: Ordinary differential equations (ODE)
Model format: Matlab package
DownloadThis version is P2011.1.2, model ID PLM_71 version 1. Dynamics identical to P2011.1.1 of the Pokhilko et al. 2012 publication.
http://www.plasmo.ed.ac.uk/plasmo/models/download.shtml?accession=PLM_71&version=1
Creator: Andrew Millar
Contributor: Andrew Millar
Model type: Ordinary differential equations (ODE)
Model format: SBML
Abstract (Expand)
Authors: Andrew Millar, Wenden B.,Toner D. L.,Hodge S. K.,Grima R.
Date Published: 13th Apr 2012
Journal: Proc Natl Acad Sci U S A
Abstract (Expand)
Authors: Daniel Seaton, Andrew Millar, Smith R. W.,Song Y. H.,MacGregor D. R.,Stewart K.,Steel G.,Foreman J.,Penfield S.,Imaizumi T.,Halliday K. J.
Date Published: 21st Jan 2015
Journal: Mol Syst Biol
