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Arabidopsis clock models P2011.1.2 and P2011.2.1 - PLM_71, version 1, SUBMITTED

Arabidopsis clock models P2011.1.2 and P2011.2.1 - PLM_71, version 1, SUBMITTED
Version 1

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Originally submitted model file for PLaSMo accession ID PLM_71, version 1

SEEK ID: https://fairdomhub.org/models/388?version=1

1 item is associated with this Model:

PLM71_1_SUBMITTED.xml (XML document - 82.3 KB)

Organism: Not specified

Model type: Not specified

Model format: SBML

Execution or visualisation environment: Not specified

Model image: No image specified

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Andrew Millar

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No license - no permission to use unless the owner grants a licence

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Views: 89 Downloads: 4

Created: 10th Jan 2019 at 17:47

Last updated: 22nd Jan 2019 at 18:17

Last used: 21st Feb 2019 at 14:05

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None

Related items

People (2)
Projects (1)
Investigations (1)
Studies (1)
Assays (1)

BioData SynthSys

Projects: PlaSMo model repository

Institutions: University of Edinburgh

Andrew Millar

Projects: Millar group, TiMet, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, POP - the Parameter Optimisation Problem, Regulation of flowering time pathways in Arabidopsis on the summer Solstice., PlaSMo model repository

Institutions: University of Edinburgh

https://orcid.org/0000-0003-1756-3654

Roles: Project Coordinator, Vice Coordinator

Expertise: Data Management, Molecular Biology, Genetics, Deterministic modelling of gene regulation networks, Systems Biology, circadian rhythms, arabidopsis thaliana, Mathematical modelling

Tools: Deterministic models, Stochastic models, SBML, Transcriptomics, Proteomics

PlaSMo model repository

What is PlaSMo?

PlaSMo stands for Plant Systems-biology Modelling

Ensuring the achievements of yesterday's Mathematical Modellers will be available for the Systems Biologists of tomorrow.

Our aims

To identify plant mathematical models useful to the UK plant systems biology community, which are currently in a variety of legacy formats and in danger of being lost

To represent these models in a declarative XML-based
...

Programme: SynthSys

Public web page: Not specified

Organisms: Arabidopsis thaliana, Ostreococcus tauri

Millar, Andrew

PlaSMo model repository

All contributors

Andrew Millar

Collection of models submitted to PLaSMo by Andrew Millar and automatically transferred to FAIRDOM Hub.

Snapshots: No snapshots

Studies: Arabidopsis clock model P2011, graphical diagram - PLM_1045, Arabidopsis clock model P2011.3.1 - PLM_1041, Arabidopsis clock model P2011.4.1 - PLM_1042, Arabidopsis clock model P2011.5.1 - PLM_1043, Arabidopsis clock model P2011.6.1 - PLM_1044, Arabidopsis clock models P2011.1.2 and P2011.2.1 - PLM_71, Arabidopsis_clock_P2011 - PLM_64, Arabidopsis_clock_P2012 - PLM_70, At_Pokh2011_LD_degr_Op1Ap3.xml - PLM_67, At_Pokh2011v6_plasmo_ltdParams.xml - PLM_68, AuxSim - PLM_27, AuxSim full - PLM_30, DomijanTS_AtClock2011 - PLM_50, Locke2005_CircadianClock_tanh - PLM_8, Locke2006_CircadianClock_tanh - PLM_10, OK MEP pathway 2013 - PLM_72, P2012_AJMv2_NoABA - PLM_69, Salazar2009_FloweringPhotoperiod - PLM_9, Sorokina2011_Ostreo_starch - PLM_44, Wilczek photothermal Science - PLM_48

Assays: Arabidopsis clock model P2011, graphical diagram - PLM_1045, version 1, Arabidopsis clock model P2011.3.1 - PLM_1041, version 1, Arabidopsis clock model P2011.4.1 - PLM_1042, version 1, Arabidopsis clock model P2011.5.1 - PLM_1043, version 1, Arabidopsis clock model P2011.6.1 - PLM_1044, version 1, Arabidopsis clock models P2011.1.2 and P2011.2.1 - PLM_71, version 1, Arabidopsis clock models P2011.1.2 and P2011.2.1 - PLM_71, version 2, Arabidopsis_clock_P2011 - PLM_64, version 1, Arabidopsis_clock_P2011 - PLM_64, version 2, Arabidopsis_clock_P2011 - PLM_64, version 3, Arabidopsis_clock_P2011 - PLM_64, version 4, Arabidopsis_clock_P2012 - PLM_70, version 1, Arabidopsis_clock_P2012 - PLM_70, version 2, At_Pokh2011_LD_degr_Op1Ap3.xml - PLM_67, version 1, At_Pokh2011_LD_degr_Op1Ap3.xml - PLM_67, version 2, At_Pokh2011_LD_degr_Op1Ap3.xml - PLM_67, version 3, At_Pokh2011_LD_degr_Op1Ap3.xml - PLM_67, version 4, At_Pokh2011_LD_degr_Op1Ap3.xml - PLM_67, version 5, At_Pokh2011_LD_degr_Op1Ap3.xml - PLM_67, version 6, At_Pokh2011v6_plasmo_ltdParams.xml - PLM_68, version 1, AuxSim - PLM_27, version 1, AuxSim full - PLM_30, version 1, DomijanTS_AtClock2011 - PLM_50, version 1, DomijanTS_AtClock2011 - PLM_50, version 2, Locke2005_CircadianClock_tanh - PLM_8, version 1, Locke2006_CircadianClock_tanh - PLM_10, version 1, OK MEP pathway 2013 - PLM_72, version 1, P2012_AJMv2_NoABA - PLM_69, version 1, P2012_AJMv2_NoABA - PLM_69, version 2, Salazar2009_FloweringPhotoperiod - PLM_9, version 1, Salazar2009_FloweringPhotoperiod - PLM_9, version 2, Sorokina2011_Ostreo_starch - PLM_44, version 1, Wilczek photothermal Science - PLM_48, version 1, Wilczek photothermal Science - PLM_48, version 2

Created: 10th Jan 2019 at 17:37, Last updated: 22nd Jan 2019 at 18:15

Arabidopsis clock models P2011.1.2 and P2011.2.1 - PLM_71

PlaSMo model repository

All contributors

BioData SynthSys

Andrew Millar

The models in this record were published in Flis et al. Royal Society Open Biology 2015. Their original IDs in the PlaSMo resource and IDs in Biomodels are given below. Please select files for download from the 'Related Items' list or the object tree/graph, below. 'SUBMITTED' is the original model version; 'SIMPLIFIED' removes SBML elements that were incompatible with SloppyCell software.

<strong>Original model</strong>: Arabidopsis clock model P2011.1.1 from
...

Person responsible: BioData SynthSys

Snapshots: No snapshots

Investigation: Millar, Andrew

Assays: Arabidopsis clock models P2011.1.2 and P2011.2.1 - PLM_71, version 1, Arabidopsis clock models P2011.1.2 and P2011.2.1 - PLM_71, version 2

Created: 10th Jan 2019 at 17:38, Last updated: 24th Jan 2019 at 19:14

Arabidopsis clock models P2011.1.2 and P2011.2.1 - PLM_71, version 1

PlaSMo model repository

All contributors

BioData SynthSys

Andrew Millar

The models in this record were published in Flis et al. Royal Society Open Biology 2015. They will be submitted to Biomodels when we have a PubMed ID for the paper. Original model: Arabidopsis clock model P2011.1.1 from Pokhilko et al. Mol Syst. Biol. 2012, http://dx.doi.org/10.1038/msb.2012.6

Published version is Biomodels ID 00412, http://www.ebi.ac.uk/compneur-srv/biomodels-main/BIOMD0000000412
...

Contributor: BioData SynthSys

Biological problem addressed: Gene Regulatory Network

Snapshots: No snapshots

Investigation: Millar, Andrew

Study: Arabidopsis clock models P2011.1.2 and P2011.2....

Organisms: No organisms

Models: Arabidopsis clock models P2011.1.2 and P2011.2...., Arabidopsis clock models P2011.1.2 and P2011.2....

SOPs: No SOPs

Data files: No Data files

Created: 10th Jan 2019 at 17:39, Last updated: 22nd Jan 2019 at 18:16

Arabidopsis clock models P2011.1.2 and P2011.2.1 - PLM_71, version 1, SUBMITTED Version 1

Related items

What is PlaSMo?

Our aims

Arabidopsis clock models P2011.1.2 and P2011.2.1 - PLM_71, version 1, SUBMITTED
Version 1