Arabidopsis clock model P2011.4.1 - PLM_1042
This model is one of five new parameter sets for P2011, published in Flis et al. Royal Society Open Biology 2015. They will be submitted to Biomodels when we have a PubMed ID for the paper.
Derived from Original model: P2011.1.2 is public model ID PLM_71 version 1, http://www.plasmo.ed.ac.uk/plasmo/models/download.shtml?accession=PLM_71&version=1
This model P2011.4.1 is public model ID PLM_1042, with parameters optimised by Kevin Stratford using SBSInumerics software on the UK national supercomputer HECTOR, as described in Flis et al. RSOB 2015.
In the model name, Plasmo ID PLM_67 was a private, working version. t34 is the private optimisation run number.
Related Publications
Flis et al (2015). Open Infrastructure. RSOB. Retrieved from: dx.doi.org/10.1098/rsob.150042
Originally submitted to PLaSMo on 2015-09-02 19:14:50
SEEK ID: https://fairdomhub.org/studies/485
Projects: PlaSMo model repository
Experimentalists: Not specified
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Created: 10th Jan 2019 at 17:38
Last updated: 22nd Jan 2019 at 18:16
Related items
Projects: PlaSMo model repository
Institutions: University of Edinburgh
Projects: Millar group, TiMet, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, POP - the Parameter Optimisation Problem, Regulation of flowering time pathways in Arabidopsis on the summer Solstice., PlaSMo model repository
Institutions: University of Edinburgh
https://orcid.org/0000-0003-1756-3654
What is PlaSMo?
PlaSMo stands for Plant Systems-biology Modelling
Ensuring the achievements of yesterday's Mathematical Modellers will be available for the Systems Biologists of tomorrow.
Our aims
- To identify plant mathematical models useful to the UK plant systems biology community, which are currently in a variety of legacy formats and in danger of being lost
- To represent these models in a declarative XML-based
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Programme: SynthSys
Public web page: Not specified
Collection of models submitted to PLaSMo by Andrew Millar and automatically transferred to FAIRDOM Hub.
Snapshots: No snapshots
This model is one of five new parameter sets for P2011, published in Flis et al. Royal Society Open Biology 2015. They will be submitted to Biomodels when we have a PubMed ID for the paper. Derived from Original model: P2011.1.2 is public model ID PLM_71 version 1, http://www.plasmo.ed.ac.uk/plasmo/models/download.shtml?accession=PLM_71&version=1 This model
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Contributor: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Snapshots: No snapshots
Simplified model file for PLaSMo accession ID PLM_1042, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)
Creators: BioData SynthSys, Andrew Millar, Andrew Millar
Contributor: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_1042, version 1
Creators: BioData SynthSys, Andrew Millar, Andrew Millar
Contributor: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
