The FAIRDOMHub

4 items tagged with 'genome-scale modeling'.

People (4)

Projects: Not specified

Institutions: Not specified

Expertise: Biochemistry, Software Engineering, Metabolic Control Analaysis, SBML, standards, Kinetic modelling, Python, genome-scale modeling

Tools: Python, PySCeS, CBMPy, JWS Online, SBML, SED-ML, Web services, metabolic network visualization, libSBML, FBA, F-A-M-E, Kinetic Modeling

Biochemist currently keeping busy as: Research Data Manager (Vrije Universiteit Amsterdam), Software Engineer (Heidelberg University) and member of the SBML Development Team (Caltech).

Eduard Kerkhoven

Projects: SilicoTryp, SYSTERACT, SynBio4Flav

Institutions: University of Glasgow, Chalmers University of Technology

https://orcid.org/0000-0002-3593-5792

Expertise: genome-scale modeling, Kinetic modelling, metabolism, Metabolomics, Metabolic Engineering, Transcriptomics, Microbiology, Data Integration

Tools: R, Matlab, COBRA toolbox, Copasi, RNAseq, Bioreactor experiments, Metabolomics, Dynamic modelling

Bas Teusink

Projects: SysMO-LAB, SysMilk, IMOMESIC

Institutions: Wageningen University & Research, VU University Amsterdam

https://orcid.org/0000-0003-3929-0423

Roles: Vice Coordinator

Expertise: Metabolic Pathway Analysis and Engineering Microbial Physiology Modeling of Biological Networks Industrial Systems Biotechnology White Biotech..., genome-scale modeling, enzyme kinetics, Dynamics and Control of Biological Networks

Tools: Metabolomics, enzymatic analyses, Chemostat culture, Kinetic Modeling

Since August 2008 I am professor in Systems Biology at the VU University Amsterdam. My Systems Bioinformatics group focusses on systems biology with a special focus on integrative bioinformatics. It aims at forming bridges between the classical bottom-up approaches in systems biology and the more data-driven approaches in classical bioinformatics. We combine experimental, modeling and theoretical approaches to study cellular physiology, with an emphasis on metabolic networks.