Model files for FMv1.5. The model is based on FMv1 of Chew et al. PNAS 2014, which is also in FAIRDOMHub and linked to the Model record as an 'Attribution'. FMv1 was extended in this work by Hannah Kinmonth-Schultz and Daniel Seaton, in Matlab.
Investigation: Temperature effects on Arabidopsis floral induc...
Study: Construction of the Framework Model v1.5
Organisms: Arabidopsis thaliana : Col-0 wild type (wild-type / wild-type)
Models: framework model v1_5
SOPs: No SOPs
Data files: Data_training & testing
Model associated with the following:
Hannah A Kinmonth-Schultz, Melissa J S MacEwen, Daniel D Seaton, Andrew J Millar, Takato Imaizumi, Soo-Hyung Kim, An explanatory model of temperature influence on flowering through whole-plant accumulation of FLOWERING LOCUS T in Arabidopsis thaliana, in silico Plants, Volume 1, Issue 1, 2019, diz006, https://doi.org/10.1093/insilicoplants/diz006
Creator: Hannah Kinmonth-Schultz
Submitter: Hannah Kinmonth-Schultz
Model type: Not specified
Model format: Matlab package
Environment: Matlab
Organism: Arabidopsis thaliana
Investigations: Temperature effects on Arabidopsis floral induc...
Studies: Construction of the Framework Model v1.5
Modelling analyses: Composition of Framework Model FMv1.5
This record includes Matlab and Simile format versions of the Arabidopsis Framework Model version 1, FMv1 (Chew et al, PNAS 2014; http://www.pnas.org/content/early/2014/08/27/1410238111), copied from the PlaSMo resource (www.plasmo.ed.ac.uk), PLM_ID=76. The model description is in the Supplementary Materials of the publication, which should be uploaded somewhere here also but I don't see how to do it.
The FMv1 links the following sub-models:
1. Arabidopsis leaf carbohydrate model (Rasse and
...
Creators: Andrew Millar, Yin Hoon Chew
Submitter: Andrew Millar
Model type: Not specified
Model format: Matlab package
Environment: Matlab
Organism: Arabidopsis thaliana
Investigations: Arabidopsis Framework Model v1, predicting rose..., Prediction and analysis of phenotypes in Arabid... and 1 hidden item
Studies: Construction of Framework Model v1 and 2 hidden items
Modelling analyses: Arabidopsis Framework Model v1, Matlab and Simi... and 2 hidden items
Abstract (Expand)
Authors: Hannah A Kinmonth-Schultz, Melissa J S MacEwen, Daniel D Seaton, Andrew J Millar, Takato Imaizumi, Soo-Hyung Kim
Date Published: 2019
Publication Type: Journal
DOI: 10.1093/insilicoplants/diz006
Citation: in silico Plants 1(1),diz006
Abstract
Authors: Hannah A Kinmonth-Schultz, Melissa J MacEwen, Daniel D Seaton, Andrew J Millar, Takato Imaizumi, Soo-Hyung Kim
Date Published: No date defined
Publication Type: Not specified
DOI: 10.1101/267104
Citation: Mechanistic model of temperature influence on flowering through whole-plant accumulation of FT
Abstract (Expand)
Authors: Yin Hoon Chew, Daniel D. Seaton, Virginie Mengin, Anna Flis, Sam T. Mugford, Alison M. Smith, Mark Stitt, Andrew J Millar
Date Published: No date defined
Publication Type: Not specified
DOI: 10.1101/105437
Citation: Linking circadian time to growth rate quantitatively via carbon metabolism
Abstract (Expand)
Authors: Y. H. Chew, B. Wenden, A. Flis, V. Mengin, J. Taylor, C. L. Davey, C. Tindal, H. Thomas, H. J. Ougham, P. de Reffye, M. Stitt, M. Williams, R. Muetzelfeldt, K. J. Halliday, A. J. Millar
Date Published: 10th Sep 2014
Publication Type: Not specified
PubMed ID: 25197087
Citation: Proc Natl Acad Sci U S A. 2014 Sep 30;111(39):E4127-36. doi: 10.1073/pnas.1410238111. Epub 2014 Sep 2.