Composition of Framework Model FMv1.5
Model files for FMv1.5, based on FMv1 of Chew et al. PNAS 2014, as extended by Hannah Kinmonth-Schultz and Daniel Seaton, in Matlab.
**Files used for published simulations will be attached here upon final publication, possibly with a later version that increases commenting. Our apologies for any delay.**
SEEK ID: https://fairdomhub.org/assays/1011
Modelling Analysis
Projects: Millar group, PlaSMo model repository, Regulation of flowering time in natural conditions
Investigation: Temperature effects on Arabidopsis floral induction at the leaf-specific level
Study: Construction of the Framework Model v1.5
Biological problem addressed: Model Analysis Type
Organisms: Arabidopsis thaliana : Col-0 wild type (wild-type / wild-type)
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Created: 2nd May 2019 at 15:43
Last updated: 1st Sep 2019 at 20:19
Related items
Projects: Millar group, TiMet, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository
Institutions: University of Edinburgh
https://orcid.org/0000-0003-1756-3654
Research programme in the Takato Imaizumi lab, with multiple collaborators. Published in Song et al. Nature Plants 2018; Kinmonth-Schultz et al., in silico Plant 2019.
Programme: SynthSys
Public web page: https://faculty.washington.edu/takato/
What is PlaSMo?
PlaSMo stands for Plant Systems-biology Modelling
Ensuring the achievements of yesterday's Mathematical Modellers will be available for the Systems Biologists of tomorrow.
Our aims
To identify plant mathematical models useful to the UK plant systems biology community, which are currently in a variety of legacy formats and in danger of being lost
To represent these models in a declarative XML-based format, which is closer to the systems biology standard SBML
To evaluate the behaviour
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Programme: SynthSys
Public web page: Not specified
Andrew Millar's research group, University of Edinburgh
Programme: SynthSys
Public web page: http://www.amillar.org
Project to test effects of temperature cycles on expression of Arabidopsis florigen gene FT, and whether these are mediated by temperature-dependent leaf development or temperature-specific FT expression, or both. Re-used and extended Arabidopsis Framework Model v1 to address this question. Led by Hannah Kinmonth-Schultz in Kim and Imaizumi labs, collaborating with Millar lab.
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Assays for model composition here, in order to share model files; potentially training and validation data in other Studies.
Person responsible: Andrew Millar
Snapshots: No snapshots
