People

91 People found

Sebastian Höpfl

Projects: Working Group Nicole Radde, SteaPKMod

Institutions: University of Stuttgart

https://orcid.org/0000-0002-5300-0915

Expertise: Computational Systems Biology, Dynamic modelling, Systems Biology, Metabolic Engineering, Modeling, Parameter estimation, SBML, standards, Bayesian statistics, Uncertainty quantification

Tools: Python, Databases, Matlab

Currently I focuse on the integration of data into multi-scale models with statistical methods and uncertainty tracking in the research unit QuaLiPerF.

Dragos Horvath

Projects: Kinetics on the move - Workshop 2016

Institutions: Kinetics on the move Workshop at HITS

Expertise: chemoinformatics, drug design, molecular modeling, Scientific Computing

Yu Ji

Projects: MIX-UP

Institutions: RWTH Aachen University

Renate Kania

Projects: SysMO-LAB, de.NBI-SysBio, Kinetics on the move - Workshop 2016, Example use cases

Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)

Expertise: Biochemistry, Biology

Tools: Databases, Data Management

I'm a biologist working in the field of scientific datases as a biocurator.

Viviane Klingel

Projects: Working Group Nicole Radde

Institutions: University of Stuttgart

Michael Kohl

Projects: Kinetics on the move - Workshop 2016

Institutions: Kinetics on the move Workshop at HITS

Matthias König

We are investigating liver metabolism and function with the help of computational models and methods.

Group Leader Dr. Matthias König

Institute for Theoretical Biology Humboldt-University Berlin Philippstraße 13, 10115 Berlin, Germany phone +49 30 2093-98435 koenigmx@hu-berlin.de https://www.livermetabolism.com

The König group works on computational modeling, data science, data management, bioinformatics methods and machine learning on ...

Olga Krebs

Projects: SysMO DB, FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, ZucAt, SysMO-LAB, Kinetics on the move - Workshop 2016, Example use cases, FAIRDOM user meeting, ErasysApp Funders, EraCoBiotech 2 nd call proposal preparation, Service to URV Tarragona, Spain with respect to their Safety Assessment of Endocrine Disrupting Chemicals model (Active NOW), FAIRDOM & LiSyM & de.NBI Data Structuring Training, MESI-STRAT, INCOME, Multiscale modelling of state transitions in the host-microbiome-brain network, BESTER, TRALAMINOL, Sustainable co-production, INDIE - Biotechnological production of sustainable indole, Extremophiles metabolsim, PoLiMeR - Polymers in the Liver: Metabolism and Regulation, OLCIR: Optimization of Lung Cancer Therapy with Ionizing Radiation, NAD COMPARTMENTATION, HOTSOLUTE, Stress granules, FAIRDOM Community Workers, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population, COVID-19 Disease Map, AquaHealth (ERA-BlueBio), LiSyM Core Infrastructure and Management (LiSyM-PD), Early Metabolic Injury (LiSyM-EMI - Pillar I), Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III), Chronic Liver Disease Progression (LiSyM-DP - Pillar II), Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV), The Hedgehog Signalling Pathway (LiSyM-JGMMS), Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP), Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM), Modelling COVID-19 epidemics, SNAPPER: Synergistic Neurotoxicology APP for Environmental Regulation, SCyCode The Autotrophy-Heterotrophy Switch in Cyanobacteria: Coherent Decision-Making at Multiple Regulatory Layers, SASKit: Senescence-Associated Systems diagnostics Kit for cancer and stroke, CC-TOP, BioCreative VII, MESI-STRAT Review, SDBV/HITS, MESI-Review 2024

Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH), FAIRDOM User meeting, Norwegian University of Science and Technology, University of Rostock, University of Innsbruck

https://orcid.org/0000-0003-3540-0402

Expertise: Genetics, Molecular Biology, Bioinformatics, Data Management, Transcriptomics, semantics, Curation, Ontology, Data Modelling

Tools: Cell and tissue culture, Databases, Chip-chip, BioMart, Protege, RightField, SEEK

I am a researcher at the Scientific Databases and Visualization Group at Heidelberg Institute for Theoretical Studies (HITS) , one of the developers of SabioRK - System for the Analysis of Biochemical Pathways - Reaction Kinetics (http://sabiork.h-its.org/) . I am working on design and maintenance of the information systems to store, query and analyse systems biology data; definition and implementation of methods for the integration of data from multiple sources. In **[SySMO-DB ...

Carina Krumrein

Projects: Working Group Nicole Radde

Institutions: University of Stuttgart

Ilya Kublanov

Projects: ExtremoPharm, Extremophiles metabolsim

Institutions: Winogradsky Institute of Microbiology, Federal Research Center “Biotechnology", Russian Academy of Sciences

kublanov.ilya@gmail.com

Ursula Kummer

Projects: SysMO-LAB, Kinetics on the move - Workshop 2016, de.NBI-SysBio

Institutions: University of Heidelberg

Expertise: Mathematical modelling of biological systems, Mathematical modelling; Nonlinear Dynamics; Time Series Analysis; network theory

Tools: Copasi

Ursula Kummer is heading the dept. "Modeling of Biological Processes" at the University of Heidelberg.

Alan Lai

Projects: Kinetics on the move - Workshop 2016

Institutions: Kinetics on the move Workshop at HITS

https://orcid.org/0000-0003-0916-9227

Xin Lai

Projects: Kinetics on the move - Workshop 2016

Institutions: University of Erlangen-Nuernberg

https://orcid.org/0000-0003-4913-5822

Aaron Laier

Projects: Working Group Nicole Radde

Institutions: University of Stuttgart

Hadas Leonov

Projects: Kinetics on the move - Workshop 2016

Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)

Expertise: computational structural biology

Tools: Molecular Dynamics, Data Management, Databases, Data Science, web development, Ruby on Rails, Python

Research associate at HITS, software developer

David Leprich

Projects: Working Group Nicole Radde

Institutions: University of Stuttgart

Wolfgang Mader

Projects: Kinetics on the move - Workshop 2016

Institutions: Kinetics on the move Workshop at HITS

Irina Medvedeva

Projects: ZucAt

Institutions: Novosibirsk State University

Expertise: Bioinformatics, Molecular Biology, protein structure

Tools: R package, MySQL, Perl

I got my Master’s Degree in Biomathematics, Bioinformatics, and Computational Biology 2007 at Novosibirsk State University (NSU). I am working at Computer Proteomics Laboratory, Institute of Cytology and Genetics SB RAS. We develope computer system to analyze the coding features of functional sites by taking into account the exon structure of the gene, to detect the exons involved in shuffling in protein evolution, also to design protein-engineering experiments. Tools developed - SitEx http://www-bionet ...

Salma Moalla

Projects: Working Group Nicole Radde

Institutions: University of Stuttgart

Wolfgang Müller

Projects: SysMO DB, FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, de.NBI-SysBio, Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III), Early Metabolic Injury (LiSyM-EMI - Pillar I), Chronic Liver Disease Progression (LiSyM-DP - Pillar II), LiSyM Core Infrastructure and Management (LiSyM-PD), Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV), Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM), Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP), The Hedgehog Signalling Pathway (LiSyM-JGMMS), Kinetics on the move - Workshop 2016, Example use cases, SBEpo - Systems Biology of Erythropoietin, FAIRDOM & LiSyM & de.NBI Data Structuring Training, MESI-STRAT, INCOME, EnzymeML, PoLiMeR - Polymers in the Liver: Metabolism and Regulation, MS_DILI, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", COMBINE Multicellular Modelling, COVID-19 Disease Map, COVID-19 related studies and tools in Germany, nfdi4health - German National Research Data Infrastructure for Personal Health Data, NMTrypI - New Medicines for Trypanosomatidic Infections, ModeleXchange initiative, SNAPPER: Synergistic Neurotoxicology APP for Environmental Regulation, BioCreative VII, SDBV ephemeral data exchanges, The BeeProject, SDBV/HITS, MESI-STRAT Review, MESI-Review 2024, DeepCurate

Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)

https://orcid.org/0000-0002-4980-3512

Expertise: Software Engineering, Information Retrieval, Human-Computer Interaction, Distributed Systems

Tools: Data Management, Databases, Java, Spring, Grails web development framework, Ruby on Rails, Javascript, SABIO-RK database, Python, SEEK

I am group leader of the SDBV (Scientific Databases and Visualisation) group at the HITS gGmbH, the Heidelberg Institute for Theoretical Studies.

I am interested in finding data. Starting with my master's thesis I have always worked on how to store data in a way that you can find it, and how to make sense out of data that has been stored.

Within FAIRDOM I find interesting to help people to store their data in a way that they make sense even after years.

Quyen Nguyen

Projects: SysMO DB, FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, Kinetics on the move - Workshop 2016

Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)

Expertise: Software Engineering, Data Management, Databases

Tools: Ruby on Rails, MySQL, HTML, Ruby, Java, Javascript

Software developer for FAIRDOM

Alexander Nikolaew

Projects: Kinetics on the move - Workshop 2016

Institutions: Kinetics on the move Workshop at HITS

Zeribe Nwosu

Projects: Kinetics on the move - Workshop 2016

Institutions: Kinetics on the move Workshop at HITS

Kevin O'Connor

Projects: MIX-UP

Institutions: University College Dublin

https://orcid.org/0000-0001-7202-0076

Yuriy Orlov

Projects: ZucAt

Institutions: Institute of Cytology and Genetics, Novosibirsk State University

Expertise: computational genomics, Computational Biology

Tools: high-throughput sequencing, ChIP-seq

I am Senior Scientist at Institute of Cytology and Genetics SB RAS in Novosibirsk. My research focus is computational genomics: high-throughput sequencing, ChIP-seq, human genome research (HUGO member), high performance computing in bioinformatics

Marek Ostaszewski