Assays

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1653 Assays visible to you, out of a total of 2679

Linear Mixed Model - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.4-Linear-Mixed-Model-for-Prot...

Data files: samples-publish2023-11-03_A.MSP.xlsx, samples-publish2023-11-03_A.SCXP.xlsx

Snapshots: No snapshots

Created: 6th Nov 2023 at 21:47, Last updated: 17th Nov 2023 at 21:50

All Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 17th Nov 2023 at 21:49, Last updated: 17th Nov 2023 at 21:50

All Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 17th Nov 2023 at 21:47, Last updated: 17th Nov 2023 at 21:50

Gene Expression Analysis - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-231107-V1_Bulk-RNAseq-analysis-of-in-vitr...

Data files: samples-publish2023-11-03_A.GEX.xlsx, samples-publish2023-11-03_D.SEQ_CEL.xlsx

Snapshots: No snapshots

Created: 6th Nov 2023 at 19:30, Last updated: 17th Nov 2023 at 21:50

Immunohistochemistry - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.7-Tissue-Sectioning,-Staining...

Data files: samples-publish2023-11-03_AB_IHC.xlsx, samples-publish2023-11-03_D.IMG_IHC.xlsx, samples-publish2023-11-03_TIS.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:48, Last updated: 17th Nov 2023 at 21:45

Mass Spectrometry Proteomics - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.3-Tissue-Preparation-for-Prot...

Data files: samples-publish2023-11-03_D.MSP.xlsx, samples-publish2023-11-03_TIS.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:49, Last updated: 17th Nov 2023 at 21:45

Single Cell Sequencing - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-231101-V1_scRNA_Protocol

Data files: samples-publish2023-11-03_D.SEQ.xlsx, samples-publish2023-11-03_DNA.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 18:31, Last updated: 17th Nov 2023 at 21:45

Mass Spectrometry Proteomics Analysis - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.3-Tissue-Preparation-for-Prot...

Data files: samples-publish2023-11-03_A.MSP.xlsx, samples-publish2023-11-03_D.MSP.xlsx

Snapshots: No snapshots

Created: 6th Nov 2023 at 21:53, Last updated: 17th Nov 2023 at 21:45

Patient Visit - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.1-Study-Approval.docx

Data files: samples-publish2023-11-03_PAT.xlsx, samples-publish2023-11-03_PAV.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:11, Last updated: 17th Nov 2023 at 21:45

Tissue Collection - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.1-Study-Approval.docx, P.GRI-231030-V1_Tissue_Protocol

Data files: samples-publish2023-11-03_PAV.xlsx, samples-publish2023-11-03_TIS.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:27, Last updated: 17th Nov 2023 at 21:45

DNA Extraction - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-231101-V1_scRNA_Protocol

Data files: samples-publish2023-11-03_DNA.xlsx, samples-publish2023-11-03_TIS.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:46, Last updated: 17th Nov 2023 at 21:45

Cell Culture and Organoid Generation - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-231030-V1_Cell_Culture_and_Organoid_Gener...

Data files: samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_TIS.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:44, Last updated: 17th Nov 2023 at 21:20

DNA Extraction - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-231101-V1_RNA-isolation-and-bulk-RNA-seq

Data files: samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_DNA_2.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 15:11, Last updated: 17th Nov 2023 at 21:20

Luminex - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_D.LMX.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 15:11, Last updated: 17th Nov 2023 at 21:20

Elisa - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-231103-V1_ELISA_Luminex_Protocol

Data files: samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_D.ELISA.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 15:13, Last updated: 17th Nov 2023 at 21:20

Cell Culture Imaging - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-231030-V4_Imaging_Protocol

Data files: samples-publish2023-11-03_AB_IMF.xlsx, samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_D.IMG_CCI.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 15:14, Last updated: 17th Nov 2023 at 21:20

Short Read Sequencing - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-231101-V1_RNA-isolation-and-bulk-RNA-seq

Data files: samples-publish2023-11-03_D.SEQ_CEL.xlsx, samples-publish2023-11-03_DNA_2.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 18:29, Last updated: 17th Nov 2023 at 21:20

Patient Visit - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.1-Study-Approval.docx

Data files: samples-publish2023-11-03_PAT.xlsx, samples-publish2023-11-03_PAV.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:08, Last updated: 17th Nov 2023 at 21:20

Tissue Collection - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.1-Study-Approval.docx, P.GRI-231030-V1_Tissue_Protocol

Data files: samples-publish2023-11-03_PAV.xlsx, samples-publish2023-11-03_TIS.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:26, Last updated: 17th Nov 2023 at 21:20

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: No SOPs

Data files: All Metadata - CD8 Depletion.xlsx

Snapshots: No snapshots

Created: 13th Oct 2023 at 20:11, Last updated: 24th Oct 2023 at 16:40

Digitally Barcoded Mtb Matrix Analysis - Data Attached

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: P.FOR-231020-V1_DBMM-Analysis-CD8.docx

Data files: A.DBMM-samples-publish2023-10-11_16-10.xlsx, CD8 Depletion Digitally Barcoded MTB Matrix.xlsx, DSEQ-BAC-samples-publish2023-10-11_15-51.xlsx

Snapshots: No snapshots

Created: 11th Oct 2023 at 17:48, Last updated: 20th Oct 2023 at 19:27

Flow Cytometry Analysis - Data Attached

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: No SOPs

Data files: A.FLOW-samples-publish2023-10-11_16-45.xlsx, CD8 counts AFLOW, CD8 cytokine AFLOW, D.FLOW-samples-publish2023-10-11_16-20.xlsx

Snapshots: No snapshots

Created: 11th Oct 2023 at 16:51, Last updated: 20th Oct 2023 at 14:51

Proteomic analyses

Heat stress response of the red-tide dinoflagellate Prorocentrum cordatum

No description specified

Submitter: Lars Wöhlbrand

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Heat stress response of Prorcentrum cordatum

Study: Heat stress response of Prorocentrum cordatum

Organisms: No organisms

SOPs: No SOPs

Data files: 2D LC MS/MS peptide analyses, Membrane protein enriched fraction, Shotgun proteomic data

Snapshots: No snapshots

Created: 8th Jul 2022 at 13:19, Last updated: 16th Oct 2023 at 09:50

Metabolite analyses

Heat stress response of the red-tide dinoflagellate Prorocentrum cordatum

No description specified

Submitter: Lars Wöhlbrand

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Heat stress response of Prorcentrum cordatum

Study: Heat stress response of Prorocentrum cordatum

Organisms: No organisms

SOPs: No SOPs

Data files: GCMS metabolite data

Snapshots: No snapshots

Created: 8th Jul 2022 at 13:27, Last updated: 16th Oct 2023 at 09:50

MolecularFormula Strings Spreadsheet_Ty

NMTrypI - New Medicines for Trypanosomatidic Infections

No description specified

Submitter: Pasquale Linciano

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Phenotypic and machine learning approaches for ...

Study: Ty-Box chemical characterization, properties an...

Organisms: No organisms

SOPs: No SOPs

Data files: Molecular Formula STRING

Snapshots: No snapshots

Created: 13th Oct 2023 at 07:12, Last updated: 13th Oct 2023 at 07:15

Molecular Formula STRING excel

NMTrypI - New Medicines for Trypanosomatidic Infections

No description specified

Submitter: Pasquale Linciano

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Phenotypic and machine learning approaches for ...

Study: Chemical characterization, and biological evalu...

Organisms: No organisms

SOPs: No SOPs

Data files: Molecular Formula STRING, Molecular Formula STRING

Snapshots: No snapshots

Created: 7th Oct 2023 at 16:57, Last updated: 7th Oct 2023 at 16:59

Usage of fine-tuned BioBERT for identification of chemical entities

BioCreative VII

Usage of fine-tuned BioBERT for identification of chemical entities

Submitter: Olga Krebs

Biological problem addressed: Annotation

Investigation: Chemical Identification and Indexing in PubMed ...

Study: Chemical named entity recognition and annotation

Organisms: No organisms

Models: WELT code

SOPs: No SOPs

Data files: BioCreative VII Track 2 - NLM-CHEM

Snapshots: No snapshots

Created: 12th Oct 2021 at 17:14, Last updated: 27th Sep 2023 at 14:21

Using semantic search in MesH and PubChem databases for entity linking

BioCreative VII

Using semantic search in MesH and PubChem databases for entity linking

Submitter: Olga Krebs

Biological problem addressed: Annotation

Investigation: Chemical Identification and Indexing in PubMed ...

Study: Chemical named entity recognition and annotation

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: BioCreative VII Track 2 - NLM-CHEM

Snapshots: No snapshots

Created: 12th Oct 2021 at 17:16, Last updated: 27th Sep 2023 at 14:21

Instructions for ENA submission

FAIRDOM, MESI-STRAT

Here we present ENA-requirements compliant template and SOP for submission steps

Submitter: Olga Krebs

Assay type: Transcriptomics

Technology type: Technology Type

Investigation: MESI-STRAT data for submission into public re...

Study: Sequence data for European Nucleotide Archive (...

Organisms: No organisms

SOPs: Standard Operating Procedure (SOP) for integra...

Data files: Excel template for metadata required by ENA t...

Snapshots: No snapshots

Created: 27th Sep 2023 at 13:56

GC-MS based analysis of metabolites

Adaptation of Salmonella enterica

No description specified

Submitter: Meina Neumann-Schaal

Assay type: Experimental Assay Type

Technology type: Gas Chromatography Mass Spectrometry

Investigation: Salmonella enterica relies on carbon metabolism...

Study: Metabolic analysis of Salmonella enterica to st...

Organisms: No organisms

SOPs: No SOPs

Data files: Salmonella enterica_metabolite data

Snapshots: Snapshot 1

Created: 21st Mar 2023 at 07:07, Last updated: 28th Aug 2023 at 13:57

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