Assay: _A_02.4_STAR Short Name: 02.4_STAR Assay Class: DRY Assay Type: STAR Title: mapping reads back to evigene .tr output Description: mapping reads back to evigene .tr output using STAR to check the percentage of reads that map pISA Assay creation date: 2019-10-22 pISA Assay creator: Marko Petek Phenodata: None Featuredata: None Data: see ./input/path_to_files.txt

DOI: 10.15490/fairdomhub.1.assay.1165.1

Zenodo URL: None

Created at: 26th Nov 2019 at 12:06



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  • path_to_files.txt


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  • output_STAR_logs-n-SJ.tar.gz


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  • STAR_commands.txt

Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato

Background: Although the reference genome of Solanum tuberosum group Phureja double-monoploid (DM) clone is available, knowledge on the genetic diversity of the highly heterozygous tetraploid group Tuberosum, representing most cultivated varieties, remains largely unexplored. This lack of knowledge hinders further progress in potato research and its subsequent applications in breeding.
Results: For the DM genome assembly, two only partially-overlapping gene models exist differing in a unique set


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Zagorscak, M., & Petek, M. (2019). _A_02.4_STAR. FAIRDOMHub. https://doi.org/10.15490/FAIRDOMHUB.1.ASSAY.1165.1
Snapshot 1 (26th Nov 2019) DOI

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Created: 26th Nov 2019 at 12:06

Last updated: 26th Nov 2019 at 12:07

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