Studies
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Submitter: Holger Janssen
Investigation: The effect of pH upon the metabolic shift in Cl...
Assays: Study of the end products of the acidogenesis and solventogenesis pathways
Submitter: Holger Janssen
Investigation: The effect of pH upon the metabolic shift in Cl...
Assays: Comparison of the proteome between pH 5.7 (acidogenesis) and pH 4.5 (sol...
To map genome wide transcriptome responses in Atlantic cod PCLS treated with BaP and EE2. See Yadetie et al., 2018.
Submitter: Fekadu Yadetie
Investigation: 1 hidden item
By generating CRISPR-mediated elovl2 knockout, we are planning to study the crucial role of elovl2 for multi-tissue synthesis of 22:6n-3 in vivo. Endogenously synthesized PUFAs are important for transcriptional regulation of lipogenic genes in Atlantic salmon. This study demonstrates key roles of elovl2 at two penultimate steps of PUFA synthesis in vivo and suggests Srebp-1 as a main regulator of endogenous PUFA synthesis in Atlantic salmon.
Submitter: Sahar Hassani
Investigation: Knockout omega-3 genes to perturb LC-PUFA metab...
Assays: Fatty Acid Analysis, RNAseq, RNAseq-splicing, Sanger sequencing
Submitter: Dawie van Niekerk
Investigation: Phase shift responses in isolated yeast glycoly...
Assays: No Assays
Eine diagnostische Studie der Stufe 1 zur Entwicklung des SARS-CoV-2-ELISA. Ziel der Studie ist die Bestimmung von Sensitivität und Spezifität des Tests bei Probanden mit bekannter Erkrankung und bei Kontrollpersonen.
https://www.drks.de/drks_web/navigate.do?navigationId=trial.HTML&TRIAL_ID=DRKS00021166
The hallmarks mapping schemes under comparison were developed over the period of 7 years and therefore were developed using different versions of the Gene Ontology and associated annotation. Understanding which differences between mapping schemes were the result of topological or annotation changes to GO could therefore help to further refine consensus and make results and conclusions more comparable between studies.
Submitter: Katy Wolstencroft
Investigation: Cancer Hallmark Consensus
Jennifer E. Kay, Joshua J. Corrigan, Amanda L. Armijo, Ilana S. Nazari, Ishwar N. Kohale, Dorothea K. Torous, Svetlana L. Avlasevich, Robert G. Croy, Dushan N. Wadduwage, Sebastian E. Carrasco, Stephen D. Dertinger, Forest M. White, John M. Essigmann, Leona D. Samson, Bevin P. Engelward
doi: https://doi.org/10.1101/2021.01.12.426356
Link to all of the Imaging done in this study: https://omero.mit.edu/webclient/?show=project-153 ...
Are there one or several stationary states for physiological parameters dependent on external KCl? For which range of external potassium the cell is able to maintain a constant pH, potassium content, membrane potential and volume?
Submitter: Falko Krause
Investigation: K+ Starvation in Saccharomyces cerevisiae
Assays: Stable membrane potential, Stable pH, Stable potassium concentration, Stable volume
Submitter: Meina Neumann-Schaal
Investigation: Systems biology investigation of aromatic compo...
Assays: CoA LC/MS Data, Cultivation for multi-OMICS, Proteomic data, Transcriptomic data, non-volatile metabolites GC/MS
Experimental study for hands on session
Submitter: Yi Chen
Investigation: Exploring the Evolution of the Gene Ontology an...
Model outputs mRNA expression of PIF4/5 that is under control of the Pokhilko extended circadian clock. The first version (Model 2a in the supplementary file) has inhibition of PIFs from TOC1. The second version (Model 2c) has PIF activity promoted by LHY/CCA1 - this is currently the most accurate model when compared to data. Models shall be updated later to include PIF4/5 protein levels. Parameter values for this and other External Coincidence models found in supplementary file.Originally submitted ...
Submitter: BioData SynthSys
Investigation: Smith, Rob
Assays: External Coincidence Model - PLM_31, version 1, External Coincidence Model - PLM_31, version 2
How does the transport of potassium and hydrogen ions effect the concentrations in the near surrounding of the cell.
Submitter: Falko Krause
Investigation: Potassium uptake in Saccharomyces cerevisiae
Assays: Potassium changes, Proton changes