SEEK ID: https://fairdomhub.org/studies/57
The effect of pH upon the metabolic shift in Clostridium acetobutylicum in continuous culture.
Projects: COSMIC
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Created: 8th Nov 2010 at 14:22
Last updated: 22nd Nov 2011 at 19:12
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Projects: COSMIC
Institutions: University of Goettingen
Expertise: pH dependent dynamic shift experiments of continuous cultures
Tools: Transcriptomics
SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".
The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.
Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...
Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep
Web page: http://sysmo.net/
Systems Biology of Clostridium acetobutylicum - a possible answer to dwindling crude oil reserves
Programme: SysMO
Public web page: http://www.sysmo.net/index.php?index=54
Organisms: Clostridium acetobutylicum
Submitter: Christina Döring
Studies: Effect of pH on the metabolome, Effect of pH on the proteome, Effect of pH upon the transcriptome, Identification of clusters of co-regulated and anti-regulated genes, Modelling the effect of pH on the metabolic shift
Assays: Comparison of the proteome between pH 5.7 (acidogenesis) and pH 4.5 (sol..., Comparison of the transcriptome between pH 5.7 (acidogenesis) and pH 4.5..., Comparison of the transcriptome between pH 5.8 (acidogenesis) and pH 4.5..., Identification of dynamically similar transcript profiles, Steady state study of the effect of gene regulation on yields of end-pro..., Study of the end products of the acidogenesis and solventogenesis pathways, Time-dependent simulations
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Investigation of the dynamic switch at pH values between 5.8 and 4.5 (pH 5.5, 5.3, 5.1, 4.9, 4.7 and 4.5).
Submitter: Sara Jabbari
Assay type: Genomics
Technology type: Microarray
Investigation: The effect of pH upon the metabolic shift in Cl...
Organisms: Clostridium acetobutylicum : ATCC824 (wild-type / wild-type)
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Comparison of the transcriptome at steady state in acidogenesis and at steady state in solventogenesis.
Submitter: Sara Jabbari
Assay type: Genomics
Technology type: Microarray
Investigation: The effect of pH upon the metabolic shift in Cl...
Organisms: Clostridium acetobutylicum : ATCC824 (wild-type / wild-type)
SOPs: No SOPs
Data files: Transcriptome data of Clostridium acetobutylicu..., Transcriptome data of Clostridium acetobutylicu...
Snapshots: No snapshots
Micro array analysis of steady-state growing cells of Clostridium acetobutylicum at pH 5.7 (acidogenesis) in comparison to pH 4.5 (solventogenesis).
Creator: Holger Janssen
Submitter: Holger Janssen
Investigations: The effect of pH upon the metabolic shift in Cl...
Studies: Effect of pH upon the transcriptome
Micro array analyses of all mRNA levels of cells growing at steady state pH values 5.7, 5.5, 5.3, 5.1, 4.9, 4.7 compared to the same reference steady-state pH 4.5.
Creator: Holger Janssen
Submitter: Holger Janssen
Investigations: The effect of pH upon the metabolic shift in Cl...
Studies: Effect of pH upon the transcriptome
Abstract (Expand)
Authors: , , , Birgit Voigt, Michael Hecker, ,
Date Published: 1st Aug 2010
Publication Type: Not specified
DOI: 10.1007/s00253-010-2741-x
Citation: