People

10 People matching the given criteria: (Clear all filters)

Expertise:

Jurgen Haanstra

Projects: SilicoTryp, IMOMESIC

Institutions: University of Groningen, VU University Amsterdam

Expertise: Mathematical modelling of biological systems, carbon metabolism, Trypanosoma brucei, Glycolysis, Cell physiology, regulation of gene expression, quantative biology

Tools: PySCeS

Beate Knoke

I am a biologist in the lab of Prof. Reuss at the University of Stuttgart and I am working in the field of biotechnology and mathematical modelling.

Theresa Kouril

Projects: SulfoSys, SulfoSys - Biotec, Glucose metabolism in cancer cell lines

Institutions: University Duisburg-Essen, Stellenbosch University

Expertise: Biochemistry, carbon metabolism, Carbohydrate Metabolism of Archaea, functional protein expression, Glycolysis, Microbiology, Molecular Biology, Systems Biology

Tools: Biochemistry, Molecular Biology, Enzyme assays

Wouter Kuit

Projects: COSMIC

Institutions: Wageningen University & Research

Expertise: Microbiology, Genetics, Molecular Biology, Systems Biology, Anaerobic Microbiology, Clostridial Genetics, Metabolic Engineering, Synthetic Biology, bacterial metabolism, carbon metabolism, Clostridium

Tools: Microbiology, Molecular Biology, Chromatography, Molecular biology techniques (RNA/DNA/Protein)

I'm an experimentalist 'Pre-doc' (I still have to finish my PhD thesis) and my work on the COSMIC project will focus on setting up a metabolomic analysis method for Clostridium acetobutylicum. In the past I have worked on metabolic engineering of the same organism by disrupting genes to asses their impact on acid and solvent formation. I'm looking forward to joining the COSMIC web-community. It hopefully will all us to stay in touch and update each other on advances in the (computer)lab.

Sandra Maass

Projects: BaCell-SysMO

Institutions: University of Greifswald

Expertise: Microbiology, Molecular Biology, Bacillus subtilis, stress responses, functional protein expression, carbon metabolism

Tools: Molecular Biology, Biochemistry and protein analysis, Proteomics, Proteomics (2D-PAGE), 2-D Gel Electrphoresis, GeLC-MS/MS, metabolic labeling, absolute quantification, AQUA

I'm Post-Doc in the lab of Prof. Becher at the University of Greifswald. I'm working on the relative and absolute protein quantitation using gel-based and mass-spectrometric methods.

Sulman Shafeeq

Projects: Noisy-Strep

Institutions: University of Groningen

Expertise: Transcriptomics, Microarray analysis, carbon metabolism, gene regulation, Streptococcus pneumoniae Molecular microbiology, Bacterial Cell Biology, Genetics

Tools: Transcriptomics, Microbiology, Molecular biology techniques (RNA/DNA/Protein), Microarray analysis

Koen van Grinsven

Projects: SysMO-LAB

Institutions: University of Amsterdam

Expertise: carbon metabolism, Biochemistry, Fermentation, Glycolysis, Microbiology

Tools: Chromatography, Fermentation, Biochemistry and protein analysis

Maksim Zakhartsev

Projects: MOSES, ExtremoPharm, ZucAt, GenoSysFat, DigiSal, EraCoBiotech 2 nd call proposal preparation, FAIRDOM & LiSyM & de.NBI Data Structuring Training

Institutions: University of Stuttgart, University of Hohenheim, Norwegian University of Life Sciences, Norwegian University of Science and Technology

https://orcid.org/0000-0002-7973-9902

I've become a SysMO DB PAL for MOSES project in 2007 being a post-doc in lab of Prof. Matthias Reuss at University of Stuttgart. In the MOSES project, our major efforts were in the experimental data acquisition for dynamic model of primary carbon and anaerobic energy metabolism in yeast. The model implements prediction of perturbations of two types: glucose pulse and temperature jump. We implement “stimulus-response” methodology for the unraveling the dynamic structure of the network and to ...

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