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Programme
ERASysAPP139
SysMO15
Independent Projects15
Era CoBioTech14
CoolWine5
LiSyM - Systems Medicine of the Liver4
FAIRDOM4
DLN - OXYMOD4
de.NBI Systems Biology Service Center (de.NBI-SysBio)3
MS_DILI3
BioZEment3
BlueBio ERA-NET COFUND3
HUMET2
NIBSys2
e:med2
Auromega2
Disease Maps2
Model repository for M4 (Make Me My Model) clients of ISBE1
Systems Biology Programme1
German Association for Medical Informatics, Biometry and Epidemiology (GMDS)1
DFG founded projects1
EU Projects1
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Project
SYSTERACT22
IMOMESIC17
SysVirDrug15
SysMetEx15
MetApp15
SysMilk12
XyloCut11
INBioPharm11
ROBUSTYEAST9
LEANPROT9
CropClock8
STREAM7
WineSys7
SCaRAB6
BESTER6
C1Pro6
CoolWine5
Chronic Liver Disease Progression (LiSyM-DP - Pillar II)4
Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III)4
FAIRDOM user meeting4
OXYMOD4
RootBook3
Kinetics on the move - Workshop 20163
MS_DILI3
BioZEment 2.03
AquaHealth (ERA-BlueBio)3
SASKit: Senescence-Associated Systems diagnostics Kit for cancer and stroke3
SysMO-LAB2
SilicoTryp2
iRhythmics2
ErasysApp Funders2
HUMET Startup2
INCOME2
Rhodolive2
INDIE - Biotechnological production of sustainable indole2
PoLiMeR - Polymers in the Liver: Metabolism and Regulation2
Auromega2
OLCIR: Optimization of Lung Cancer Therapy with Ionizing Radiation2
COVID-19 Disease Map2
SNAPPER: Synergistic Neurotoxicology APP for Environmental Regulation2
BaCell-SysMO1
COSMIC1
SUMO1
SysMO DB1
FAIRDOM1
ICYSB 2015 - International Practical Course in Systems Biology1
ZucAt1
Early Metabolic Injury (LiSyM-EMI - Pillar I)1
LiSyM Core Infrastructure and Management (LiSyM-PD)1
Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV)1
Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP)1
Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF)1
The Hedgehog Signalling Pathway (LiSyM-JGMMS)1
Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM)1
Example use cases1
Service to URV Tarragona, Spain with respect to their Safety Assessment of Endocrine Disrupting Chemicals model (Active NOW)1
EraCoBiotech 2 nd call proposal preparation1
FAIRDOM & LiSyM & de.NBI Data Structuring Training1
Sustainable co-production1
MESI-STRAT1
Multiscale modelling of state transitions in the host-microbiome-brain network1
HOTSOLUTE1
SynBio4Flav1
TRALAMINOL1
Extremophiles metabolsim1
GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik"1
NAD COMPARTMENTATION1
SCyCode The Autotrophy-Heterotrophy Switch in Cyanobacteria: Coherent Decision-Making at Multiple Regulatory Layers1
Stress granules1
FAIRDOM Community Workers1
Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population1
Modelling COVID-19 epidemics1
CC-TOP1
BioCreative VII1
MESI-STRAT Review1
SDBV/HITS1
MESI-Review 20241
Function, control and engineering of microbial methylotrophy1
Implementation of Nanopore Sequencing for Detection of Treatment Induced Transcriptomic and Epitranscriptomic Changes in Leukaemic Tumour Models1
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Institution
SINTEF14
Norwegian University of Science and Technology9
ETH Zurich9
Chalmers University of Technology8
German Cancer Research Center (DKFZ)6
University of Tübingen6
Forschungszentrum Jülich5
European Molecular Biology Laboratory5
University of Luxembourg5
Lund University5
VU University Amsterdam4
University of Leiden4
UNIBI: Bielefeld University4
University of Rostock3
University of Freiburg3
Linnaeus University3
Ruhr University Bochum3
Charité University Medicine Berlin3
Ecole Polytechnique Fédérale de Lausanne (EPFL)3
University of Tuebingen2
Otto-von-Guericke University Magdeburg2
Leiden University Medical Center2
Università della Svizzera Italiana2
TATAA BioCenter2
INSA Toulouse2
University of Gothenburg2
University of Cyprus2
Universitity Duisburg-Essen2
Technische Universität Berlin (TU Berlin)2
Latvia University of Agriculture2
Freie Universität Berlin2
Delft University of Technology (DUT)2
Competence Center of Food and Fermentation Technologies2
Heidelberg Institute for Theoretical Studies (HITS gGmbH)1
University of Amsterdam1
University Duisburg-Essen1
University of Greifswald1
University of Groningen1
University of Heidelberg1
Wageningen University & Research1
University of Glasgow1
Technische Universität Dresden1
Utrecht University1
NovaMechanics Ltd1
Technology Transfer Heidelberg GmbH1
Biobyte Solutions GmbH (BS)1
Chr-Hansen A/S (CH)1
Sinvent AS - SINTEF1
Griffin Discoveries BV1
Universitat Rovira i Virgili1
Heinrich Heine University of Düsseldorf1
Linköping University1
Syngenta Seeds GmbH1
University of Oslo1
biotechrabbit GmbH1
FAIRDOM User meeting1
Institute of Microbiology and Biotechnology, University of Latvia1
Universitätsklinikum Leipzig1
KTH Royal Institute of Technology1
University of Innsbruck1
INRAE1
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Location
Germany56
Norway22
Sweden21
Switzerland14
Netherlands14
Luxembourg5
Cyprus3
Estonia2
France2
Latvia2
Austria1
Denmark1
Spain1
United Kingdom1
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Expertise
Systems Biology10
Microbiology9
Metabolic Engineering8
Genetics6
Molecular Biology6
Bioinformatics5
Transcriptomics5
Metabolomics5
Proteomics4
Dynamics and Control of Biological Networks4
Biochemistry3
Mathematical modelling3
Fermentation3
Data analysis3
Molecular microbiology3
genome-scale modeling3
Kinetic modelling3
Data Management2
Genomics2
Mass spectrometry (LC-MS/MS)2
Cell physiology2
carbon metabolism2
Fluxomics2
Stoichiometric modelling2
Bioleaching2
metabolism2
metabolic systems biology2
Analytical chemistry2
Data Integration2
Parameter estimation2
Metabolic Networks2
Cell biology1
Databases1
Python1
Microarray analysis1
Escherichia coli1
Saccharomyces cerevisiae1
Streptomyces coelicolor1
coupling metabolome and environome1
dynamics of biological networks1
Mathematical and statistical modeling1
Programming1
Data analysis
Mathematical modelling
Bioinformatics
Systems biology1
Computational Systems Biology1
membrane biology1
functional protein expression1
regulation of gene expression1
Dynamic modelling1
Dynamic optimization.1
Time Series Analysis1
Mathematical modelling of biological systems1
Microbiology Biochemistry Molecular biology Genetics Enzymology Synthetic biology Regulatory metabolic networks1
Synthetic Biology1
Metabolic Pathway Analysis and Engineering
Microbial Physiology
Modeling of Biological Networks
Industrial Systems Biotechnology
White Biotechnology
Strain and Process Optimization with bacteria1
Biotechnology1
Pseudomonas1
Streptomyces1
Prokaryotic genetics1
genetic engineering1
enzyme kinetics1
Glycolysis1
Trypanosoma brucei1
semantics1
Downstream Processing1
Methode Development1
Automatization1
NK Cells1
Immunology1
Excemplify1
ODE modelling of biological interaction network1
Identifiability1
quantative biology1
Corynebacterium glutamicum1
Automation1
optimization1
Systems Biology Graphical Notation1
nitrogen metabolism1
Actinobacteria1
antibiotic production1
Bioreactor cultivation1
Curation1
Ontology1
Computational Biology1
Data Modelling1
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Tool
Matlab7
Proteomics6
Molecular Biology5
Transcriptomics5
Fermentation5
Molecular biology techniques (RNA/DNA/Protein)5
COBRA toolbox5
Microbiology4
Genetics4
Biochemistry and protein analysis4
Genetic modification4
Copasi4
Biochemistry3
R3
Dynamic modelling3
Mass spectrometry (LC-MS/MS)3
Bioinformatics2
Computational and theoretical biology2
Metabolomics2
ODE2
Python2
Fluorescence and confocal microscopy2
Data Management1
Cell and tissue culture1
SBML1
Databases1
Java1
Perl1
Mathematica1
qtPCR1
Chip-chip1
Mass spectrometry1
Chromatography1
Cytoscape1
stimulus response experiments1
differential algebraic equations1
continuous cultivation1
enzymatic analyses1
cultivation1
quantitative western blot analyses1
quantitative western blot analysis1
Stochastic models1
Computational Systems Biology1
Systems Biology1
BioMart1
Metabolic Engineering1
time-resolved microarray analysis1
Flow cytometry1
GC and LC analysis of metabolites1
Chemostat culture1
qRT-PCR1
HPLC1
network theory1
microbiology techniques1
Pathway Tools1
Machine Learning1
RightField1
PySCeS1
RNAseq1
Protege1
Protein Arrays1
Excemplify1
c++1
bash1
standard bioinformatic tools1
Microbial Ecology1
Bioreactor experiments1
Maxquant1
SILAC1
13C-MFA1
High-throughput phenotyping1
Integrative modeling1
Liquid handling systems1
Automation1
antiSMASH1
CloneManager1
artemis1
MS imaging1
FT-ICR-MS1
Field Flow Fractionation1
cobrapy toolbox1
Data Integration1
Parameter estimation1
Kinetic Modeling1
SEEK1
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139
People found
Projects: LEANPROT
Institutions: Competence Center of Food and Fermentation Technologies
Institutions: Latvia University of Agriculture
Projects: SysMetEx
Institutions: Università della Svizzera Italiana
Projects: SysMetEx
Institutions: Ruhr University Bochum
Projects: MetApp
Institutions: INSA Toulouse
Projects: SysVirDrug
Institutions: University of Leiden
Projects: SysVirDrug
Institutions: Technology Transfer Heidelberg GmbH
Projects: SysMetEx
Institutions: Universitity Duisburg-Essen
Projects: SysMilk
Institutions: ETH Zurich
Projects: IMOMESIC
Institutions: Universitätsklinikum Leipzig
Projects: SysVirDrug
Institutions: ETH Zurich
Projects: IMOMESIC
Institutions: Charité University Medicine Berlin
Projects: SysVirDrug
Institutions: Leiden University Medical Center
Projects: MetApp
Institutions: Sinvent AS - SINTEF
Projects: CropClock
Institutions: Syngenta Seeds GmbH
Projects: SYSTERACT
Institutions: University of Tübingen
Projects: IMOMESIC
Institutions: German Cancer Research Center (DKFZ)
Projects: INBioPharm, SYSTERACT, BESTER, OXYMOD
Institutions: SINTEF
PhD student @ "Quantitative Microbial Phenotyping" Institute of Bio- and Geosciences, IBG-1: Biotechnology Forschungszentrum Jülich GmbH 52425 Jülich, Germany
Projects: SysMO-LAB, SysMilk, IMOMESIC
Institutions: Wageningen University & Research, VU University Amsterdam
https://orcid.org/0000-0003-3929-0423
Since August 2008 I am professor in Systems Biology at the VU University Amsterdam. My Systems Bioinformatics group focusses on systems biology with a special focus on integrative bioinformatics. It aims at forming bridges between the classical bottom-up approaches in systems biology and the more data-driven approaches in classical bioinformatics. We combine experimental, modeling and theoretical approaches to study cellular physiology, with an emphasis on metabolic networks.
Projects: IMOMESIC
Institutions: German Cancer Research Center (DKFZ)
Projects: FAIRDOM user meeting, SYSTERACT, INBioPharm, OXYMOD, BioZEment 2.0
Institutions: University of Leiden, SINTEF
https://orcid.org/0000-0002-6793-7469
Projects: ROBUSTYEAST
Institutions: VU University Amsterdam
