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Independent Projects284 SysMO19 FAIRDOM17 ERASysAPP15 Disease Maps12 de.NBI Systems Biology Service Center (de.NBI-SysBio)10 Era CoBioTech9 e:Bio7 German Association for Medical Informatics, Biometry and Epidemiology (GMDS)7 LiSyM - Systems Medicine of the Liver6 DLN - OXYMOD6 The Digital Salmon5 COMBINE (Computational Modeling in Biology Network)5 nfdi4health - German National Research Data Infrastructure for Personal Health Data4 FAIR Biocatalysis4 HUMET3 NIBSys3 dCod 1.0: decoding systems toxicology of cod3 Model repository for M4 (Make Me My Model) clients of ISBE3 e:med3 BioZEment3 Systems Biology Programme3 Newcastle University Systems Modelling of Ageing3 BlueBio ERA-NET COFUND3 Research Center Borstel3 MS_DILI2 SAFE-Aqua2 Auromega2 Breast Cancer Simulation2 Innate immunity2 ERNEST - European Research Network on Signal Transduction2 Drug development for neglected parasitic diseases2 Hallmarks of cancer 2 Cancer drug discovery preclinical research2 ISBE.NL service programme2 EU Projects2 SARCHI: Mechanistic modelling of health and epidemiology1 SynthSys1 API_testing_projects1 CoolWine1 RNA Systems Biology Lab1 MIT Superfund Research1 IMPAcTB1 Covid-19 disease map - Bioinformatics analysis and computational modelling1 An overview of systematic reviews of treatment of polycystic ovary syndrome with Chinese medicine1 Thermodynamics and kinetics for Biology1 DFG founded projects1 Combined therapy involving Scalp Acupuncture and Treadmill Training Inhibits Neuronal Apoptosis in Cerebral Ischemia Rats by regulating cIAP11 CLIMAQUA1 Electroacupuncture preconditioning reduces oxidative stress in the acute phase of cerebral ischemia-reperfusion in rats by regulating iron metabolism pathways1 The Effect of Nape Acupuncture Combined with Rehabilitation Training on Dysphagia After Stroke1 NL-Bioimaging: FAIR-DM 1 COST ACTION CA21111 - OneHealthdrugs (One Health drugs against parasitic vector borne diseases in Europe and beyond) 1 Metastasis Network1 VHP Programme1 Targeted VFA production from (waste) waters - CRETUS1 Independent Project1 More...

ICYSB 2015 - International Practical Course in Systems Biology37 EmPowerPutida32 iRhythmics18 INBioPharm16 PhotoBoost16 FAIRDOM15 MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum animal vaccine13 SDBV/HITS13 COVID-19 Disease Map12 SYSTERACT11 MESI-STRAT11 SASKit: Senescence-Associated Systems diagnostics Kit for cancer and stroke9 Kinetics on the move - Workshop 20168 FAIRDOM user meeting8 GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik"7 NAD COMPARTMENTATION7 FAIRDOM Community Workers7 EbN1 Systems Biology7 SysMO DB6 Example use cases6 OXYMOD6 BESTER6 PoLiMeR - Polymers in the Liver: Metabolism and Regulation6 BioCreative VII6 Implementation of Nanopore Sequencing for Detection of Treatment Induced Transcriptomic and Epitranscriptomic Changes in Leukaemic Tumour Models6 STREAM5 DigiSal5 FAIRDOM & LiSyM & de.NBI Data Structuring Training5 ModeleXchange initiative5 Modelling COVID-19 epidemics5 SNAPPER: Synergistic Neurotoxicology APP for Environmental Regulation5 MESI-STRAT Review5 ToxiGen - Reproductive toxicity and transgenerational effects of petroleum mixtures in fish5 MESI-Review 20245 PSYSMO4 SCaRAB4 SulfoSys - Biotec4 GenoSysFat4 de.NBI-SysBio4 LiSyM Core Infrastructure and Management (LiSyM-PD)4 Multiscale modelling of state transitions in the host-microbiome-brain network4 EnzymeML4 Stress granules4 nfdi4health - German National Research Data Infrastructure for Personal Health Data4 The BeeProject4 EDITH (Ecosystem Digital Twins in Health) test project4 SysMO-LAB3 SulfoSys3 Early Metabolic Injury (LiSyM-EMI - Pillar I)3 Chronic Liver Disease Progression (LiSyM-DP - Pillar II)3 Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III)3 Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV)3 Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP)3 Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF)3 The Hedgehog Signalling Pathway (LiSyM-JGMMS)3 Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM)3 HUMET Startup3 SBEpo - Systems Biology of Erythropoietin3 Systems toxicology of Atlantic cod3 WURSynBio3 EraCoBiotech 2 nd call proposal preparation3 BioZEment 2.03 INCOME3 SynBio4Flav3 Systems modelling age-related changes in the maintenance of dermal extra-cellular matrix: mechanisms and interventions3 INDIE - Biotechnological production of sustainable indole3 OLCIR: Optimization of Lung Cancer Therapy with Ionizing Radiation3 Bergen(Ziegler lab) project AF-NADase3 NAD phylogeny3 Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population3 COVID-19 related studies and tools in Germany3 AquaHealth (ERA-BlueBio)3 Selective Destruction in Ageing3 SABIO-VIS3 Establishing an innovative and transnational feed production approach for reduced climate impact of the aquaculture sector and future food supply3 Adaptation of Salmonella enterica3 Group Data Science3 MetApp2 WineSys2 ZucAt2 Make Me My Model2 Service to URV Tarragona, Spain with respect to their Safety Assessment of Endocrine Disrupting Chemicals model (Active NOW)2 MS_DILI2 SAFE-Aqua2 COMBINE Multicellular Modelling2 Extremophiles metabolsim2 Auromega2 NAMPT affinity2 Outreach - Simulation of breast cancer development using an agent based modelling approach2 Outreach - Breast Cancer RStudio-Shiny application2 Outreach - Senescence RStudio-Shiny application2 Outreach - Simulation of cellular senescence using an agent based modelling approach2 MIX-UP2 ERNEST Mapping Group Pilot Study2 NMTrypI - New Medicines for Trypanosomatidic Infections2 Consensus Hallmark Annotation2 Mass spectrometry proteomics for biomarker discovery2 Xenophiles Systems Biology2 CC-TOP2 SDBV ephemeral data exchanges2 Heat stress response of the red-tide dinoflagellate Prorocentrum cordatum2 The nucleus of Prorocentrum cordatum2 FAIR Functional Enrichment2 Conspicuous chloroplast with LHC‒PSI/II‒megacomplex and diverse PBPs in the marine dinoflagellate Prorocentrum cordatum2 TestingSeek2 Virtual Human Platform for Safety Assessment2 BioRECIPE representation format2 Methylation differences during respiratory infection2 Revisiting mutational resistance to ampicillin and cefotaxime in Haemophilus influenzae2 BaCell-SysMO1 COSMIC1 MOSES1 SilicoTryp1 Whole body modelling of glucose metabolism in malaria patients1 Manchester Institute for Biotechnology1 ExtremoPharm1 ErasysApp Funders1 Systo models1 Service to Milano-Bicocca with respect to their ATP-ROS model (Active NOW)1 Service to University of Lisbon (Portugal) with respect to their CFTR maturation model (Active NOW)1 Service to LCSB (Luxembourg) with respect to ROS management in Parkinson’s disease and cancer model (Active NOW)1 Service to Universidade Católica Portugues with respect to their Molecular Insight into Autism Spectrum Disorder (ASD) model (Active NOW)1 Service to Slovenia with respect to their Protease signaling network in neurodegeneration model (Active NOW)1 Service to University of Duisburg- Essen (Germany): with respect to their The Yin-Yang of Metabolism; Endometatoxicity (YYME) model (Active NOW)1 Service to Sheffield University (UK): with respect to Mitochondrial perfect adaptation model (Active NOW)1 Service to Sanquin (Amsterdam): with respect to Modelling of acute and chronic inflammation (Prospective)1 Service to Munich (Germany): with respect toCharged peptide to charged membrane binding model (Prospective)1 SEEK tutorial for DigiSal1 Training Hunfeld1 Sustainable co-production1 ROS detailed model for MSB manucript1 Rhodolive1 HOTSOLUTE1 TRALAMINOL1 Are microRNAs key mediators of cartilage destruction in osteoarthritis?1 Fairdom Hub documents1 PlaSMo model repository1 RStudio-Shiny and Java_API connection testing1 CoolWine1 Dynamic interplay between nuclei and mitochondria in ageing cells1 C1Pro1 SCyCode The Autotrophy-Heterotrophy Switch in Cyanobacteria: Coherent Decision-Making at Multiple Regulatory Layers1 Agro-ecological modelling1 CF transcriptome1 miRiAD - exploring the role of microRNAs in T cell function and anti-viral defence1 ComPASs - Common Pathways in Amyotrophic Lateral Sclerosis (ALS) and Spinal Muscular Atrophy (SMA)1 LungCARD - Blood test for clinical therapy guidance of non-small cell lung cancer patients1 UnCentre - Unlocking satellite DNA and centromere structure in vertebrate chromosomes1 Standardization of enzyme-catalyzed reaction measurement1 Standardization of enzyme-catalyzed reaction modelling1 MIT SRP1 Hi-IMPAcTB1 Covid-19 Interferon pathway modelling and analysis1 CoVIDD - Coronavirus interactions in drug discovery - optimization and implementation1 An overview of systematic reviews of treatment of polycystic ovary syndrome with Chinese medicine1 Thermodynamics1 Non equilibrium thermodynamics1 Book on Thermodynamics, and kinetics1 Scalp Acupuncture and Treadmill Training Inhibits Neuronal Apoptosis Through Activating cIAP1 in Cerebral Ischemia Rats1 Establishing an innovative and transnational feed production approach for reduced climate impact of the aquaculture sector and future food supply1 Bio-crop1 ORHIZON1 Coastal Data1 Electroacupuncture preconditioning reduces oxidative stress in the acute phase of cerebral ischemia-reperfusion in rats by regulating iron metabolism pathways1 hybrid sequencing1 Teaching Alien Biology1 HOST-PAR1 Outdated material1 The Effect of Nape Acupuncture Combined with Rehabilitation Training on Dysphagia After Stroke: A Meta-analysis1 Thymidylate synthase dimer dissociation1 Boolean modeling of Parkinson disease map1 Orphan cytochrome P450 20a1 CRISPR/Cas9 mutants and neurobehavioral phenotypes in zebrafish1 Viral Metagenomic1 Synthetic biology in Synechococcus for bioeconomy applications (SynEco)1 testproject1 Test project1 Fusion-fission-mitophagy1 PHENET1 LiceVault1 UMRPégase1 DeCipher1 middle ear1 datamgmt1 Institut Pasteur's projects1 qpcr1 NL-Bioimaging FAIR Metadata Templates1 MRC-UNICORN1 WG1 - Compound libraries coordination and integration of compound design1 WG2 - Integration of early phase studies and low environmental impact actions1 WG3 - Coordination of in vitro-to-in vivo translation of OneHealth leads and candidates1 WG4 - Integration of R&D process-environmental studies and translation in informed whitepaper1 WG5 - Promote dissemination1 WG6 - Promote the transfer of knowledge1 Test project for Sciender1 qPCR1 Cell4Chem1 Artificial organelles_Pathogen digestion1 Supplementary Information 2 associated with the manuscript entitled " Label free Mass spectrometry proteomics reveals different pathways modulated in THP-1 cells infected with therapeutic failure and drug resistance Leishmania infantum clinical isolates"1 PTPN11 mutagenesis1 Supplementary Information 2 associated with the manuscript entitled "Label free Mass spectrometry proteomics reveals different pathways modulated in THP-1 cells infected with therapeutic failure and drug resistance Leishmania infantum clinical isolates"1 iPlacenta- Placenta on a chip1 Near Surface Wave-Coherent Measurements of Temperature and Humidity1 A Meta-Analysis of Functional Recovery of Aphasia after Stroke by Acupuncture Combined with Language Rehabilitation Training1 MetNet1 Phytoplankton phenology in the Bay of Biscay: using remote sensing to assess and raise awareness of climate change impacts on the sea1 Master-BIDS1 Endometriosis1 Vitis Data Crop1 ARAX: a web-based computational reasoning system for translational biomedicine1 I AM FRONTIER1 .1 PhD Nicotinic Acetylcholine Receptors1 SFB1361 playground1 Amaizing1 Stochastics and bursting1 icpm-kth1 sample project1 Genomic Medicine1 Remodeling of cIV1 PROMISEANG1 URGI1 Matsutake1 UNDESIRABLE EFFECTS OF POST COVID-19 VACCINATION: A DESCRIPTIVE STUDY, WINTER 20221 Semantic Table Interpretation in Chemistry1 MS identification of L infantum proteins related to their drug resistance patterns for new drug targets identification and ecotoxicological evaluations of their environmental and interspecies impact1 the Supplementary materials for paper1 VHP project1 Measurement of Fisheries Provisioning Services and its Pressure to Support Sustainability of Fisheries in The Jatigede Reservoir, Indonesia1 FIsh data on 2022 in the Jatigede Reservoir1 ImmPort - data sharing1 REWIRED: comparative RNA-seq and ATAC-seq in six salmonids and six outgroup telest fishes1 REWIRED1 Data Repository1 ODDITY1 WATCHER1 VIALACTEA1 APPN Test Project1 Enhanced Anticancer Effect of Thymidylate Synthase Dimer Disrupters Promoting Intracellular Accumulation1 BIDS1 Group Microbial Interface Biology1 Core Facility Fluorescence Cytometry1 UMass Chan BioImage DMS Core_FAIR Metadata Templates1 Function, control and engineering of microbial methylotrophy1 Pectobacterium pangenome1 Proteogneomics of Desulfobacteraceae members1 The evolution of Gene Ontology1 New Optical Coherence Tomography Biomarkers Identified with Deep Learning for Risk Stratification of Patients with Age-related Macular Degeneration1 Virulence-related genes expression in planktonic mixed cultures of Candida albicans and non-albicans Candida species1 Screening of Secondary Plant Metabolites on Antihelmintic Activity in Ascaris scum1 Munich Cluster for Systems Neurology1 Test project May 20241 Biospecimen Collection Protocol1 Targeting the immunoproteasome: Analyzing the biological effects of specific versus pan inhibition1 Macrophage and neutrophil redox proteome in infection with Mycobacterium tuberculosis1 Winter Wheat (Triticum aestivum L.) Grain Yield, Quality, and Net Photosynthesis When Grown Under Semi-Transparent Cadmium Telluride Photovoltaic Modules Near Maturity1 Benefit for All FAIR Data1 Lipid droplet formation and dynamics in murine macrophages1 DPL1 Glycogen Metabolism in bacteria1 ILS Ceramide Ring Trial1 Project Test1 DeepCurate1 Cancer Systems Biology Consortium (CSBC)1 Biochemical characterization of the feedforward loop between CDK1 and FOXM1 in epidermal stem cells1 Drug Discovery and Biotechnology Standard Operating Procedures1 Fluid flow project1 Smart Garden Watering System1 The role of different fatty acids1 AQUACIRCLE1 IDIM1 Sampling vicinity of industrial settings for pathogens and GMO identification1 RNA-seq data for paper1 RNA-seq data1 More...

University of Bergen16 Heidelberg Institute for Theoretical Studies (HITS gGmbH)15 Wageningen University & Research15 Rostock University Medical Centre14 SINTEF13 University of Rostock8 University of Stuttgart7 Instituto de Tecnologia Química e Biológia - Universidade Nova de Lisboa7 Norwegian University of Science and Technology6 University of Gothenburg6 CSIC6 University of Lancaster5 LifeGlimmer GmbH5 University of Innsbruck5 INRAE5 VU University Amsterdam4 University of Groningen4 Manchester Centre for Integrative Systems Biology, University of Manchester4 University of Newcastle4 CRG Centre for Genomic Regulation4 Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures4 Carl von Ossietzky University of Oldenburg Institute for Chemistry and Biology of the Marine Environment (ICBM)4 Imperial College London3 University of Amsterdam3 University of Leiden3 Norwegian University of Life Sciences3 University of Manchester - Department of Computer Science3 University of Edinburgh3 ETH Zurich3 University of Luxembourg3 Leibniz Institute for Farm Animal Biology (FBN)3 Julius Kühn Institute (JKI) - Federal Research Centre for Cultivated Plants, Institute for Epidemiology and Pathogen Diagnostics3 Fraunhofer IME3 Forschungszentrum Borstel3 University of Leida3 Institute of Physiology Academy of Sciences2 Humboldt-Universität zu Berlin2 University of Braunschweig2 Institute of Cytology and Genetics2 University Maastricht2 BASF2 ICAHN Icahn School of Medicine at Mount Sinai2 Luxembourg Centre for Systems Biomedicine (LCSB)2 University of Pittsburgh2 King AbdulAziz University2 Julius Kühn-Institut (JKI) Federal Research Centre for Cultivated Plants2 LIACS2 CSIC Madrid1 Helmholtz Centre for Infection Research Braunschweig1 University of Goettingen1 University of Newcastle-upon-Tyne1 University of Tuebingen1 University of Ulm1 Forschungszentrum Jülich1 Technical University of Munich1 Otto-von-Guericke University Magdeburg1 University of Freiburg1 University of Zürich1 Technische Universität Dresden1 INSA Toulouse1 Universität Konstanz1 Okayama University1 Buenos Aires1 University of Milano-Bicocca1 University of Tübingen1 Uni Basel1 Åbo Akademi University1 Institute for Experimental Internal Medicine1 University of Tokyo1 Max-Planck Institute for Molecular Genetics1 Institut Curie1 Stockholm University1 Radboud University Nijmegen1 Institute of Pathology1 IFIBYNE - Physiology, Molecular Biology and Neurosciences1 Winogradsky Institute of Microbiology, Federal Research Center “Biotechnology", Russian Academy of Sciences1 Novosibirsk State University1 FAIRDOM User meeting1 Institut Pasteur1 Consejo Superior de Investigaciones Científicas1 Ingenza Ltd.1 Infrastructure Systems Biology Europe1 INRA Bordeaux-Aquitaine1 The Arctic University of Norway (UiT)1 Leuphana University of Lüneburg1 University Medicine of Greifswald1 Universidade de Santiago de Compostela1 KTH Royal Institute of Technology1 RNA Systems Biology Lab - BioISI/FCUL1 Paris Brain Institute / Inria1 Oregon State University1 Università degli Studi di Modena e Reggio Emilia (UNIMORE)1 Massachusetts Institute of Technology1 HLJUCM1 Institut for Food and Environmental Research (ILU)1 Afbi1 SBI University of Rostock1 Heilongjiang University of Chinese Medicine1 ILVO1 Systems Biology Amsterdam1 INSTITUTO FEDERAL FARROUPILHA1 CIRAD1 University Medical Center Göttingen, Department of Medical Informatics1 Universität Bamberg1 Otto-Friedrich-University Bamberg, Fakultät für Wirtschaftsinformatik und Angewandte Informatik1 Institut de Génétique et de Biologie Moléculaire et Cellulaire1 Experimental Transplantation Surgery, Department of General, Visceral and Vascular Surgery, University Hospital Jena1 Cancer Registry Norway1 Technische Universität Braunschweig1 insilicotrials Technologies1 NMBU1 ut tyler1 Ural State Medical University1 Leibniz-Institut für Polymerforschung Dresden e.V.1 Università di Modena e Reggio Emilia1 Josep Carreras Leukaemia Research Institute (IJC)1 University of Dundee1 Coastal Carolina University1 University of Oviedo1 DBMI1 University of Munich LMU1 Institut Français de la Vigne et du Vin1 Institute for Food and Environmental Research (ILU)1 DIL German Institute of Food Technologies e.V.1 VITO1 Kenya Agricultural and Livestock Research Organisation (KALRO)1 IMB Mainz1 de1 Kyungpook National University1 University of Giessen1 RIVM1 Spanish National Center for Biotechnology (CNB-CSIC)1 Seoul National Univ.1 The First Affiliated Hospital of Guangzhou Medical University1 UiT The Arctic University of Norway1 Padjadjaran University1 ImmPort1 Adelaide University1 Medizinische Hochschule Hannover1 UMass Chan Medical School1 Technical University of Cluj-Napoca1 Universidad Espiritu Santo1 creative bioarray1 KWS1 Colorado State University1 University of Lübeck1 Dutch Prognostic Lab1 Tech Mahindra1 Athena – Research and Innovation Center in Information, Communication and Knowledge Technologies1 Hologenomix B.V.1 Previwo AS1 More...

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Molecular Biology20 Systems Biology19 Bioinformatics18 Data Management14 Transcriptomics11 Cell biology10 Microbiology9 Biochemistry9 Databases9 Mathematical modelling8 Genomics8 Metabolic Engineering7 Genetics6 Software Engineering6 Proteomics6 Data Integration6 Metabolomics5 R5 Data analysis5 Image analysis5 Computational Systems Biology4 Python3 Fermentation3 Dynamic modelling3 Biotechnology3 Deep Learning3 Curation3 Dynamics and Control of Biological Networks3 Metabolic Networks3 Single Cell analysis2 Java2 Microarray analysis2 Information Retrieval2 dynamics of biological networks2 Synthetic Biology2 Molecular microbiology2 Stoichiometric modelling2 Fish2 Machine Learning2 Kinetic modelling2 standards2 Image processing2 Genetic interaction2 Ecotoxicology2 Metabolic modelling2 regenerative medicine2 Modeling2 SBML1 Agent-based modelling1 Escherichia coli1 Saccharomyces cerevisiae1 dynamics of biological networks.1 Mathematical and statistical modeling1 Physics1 Mathematics1 Deterministic modelling of gene regulation networks1 Data analysis Mathematical modelling Bioinformatics Systems biology1 Mathematical modelling of biosystems and bioprocesses1 functional protein expression1 Optimal experimental design1 sensitivity analysis1 Mathematical modelling; Nonlinear Dynamics; Time Series Analysis; network theory1 Biophysics1 protein-protein interactions1 Cell physiology1 Signalling networks1 Bacterial metabolism | Metabolic engineering1 Regulatory Networks1 RNA1 Software Architecture1 Pseudomonas1 Streptomyces1 Prokaryotic genetics1 genome-scale modeling1 Biology1 REST1 Thermodynamics1 Medical microbiology1 gene expression1 network inference1 semantics1 quality control1 stochastic modelling1 Epigenomics1 Biomolecular Computing1 NGS analysis1 High-throughput data analysis1 diabetes1 insulin signaling1 adiponectin1 Model selection1 Identifiability1 Cellular Senescence1 Cell Cycle1 Dynamic Systems1 Gastric cancer1 EGFR signalling1 apoptosis1 Phenome1 Organic Synthesis1 Prostate Cancer1 Bone Biomechanics1 Biomedical Engineering1 in vitro & ex vivo cell culture1 in vivo animal models1 Epigenetics1 metabolism1 metabolic systems biology1 Cloud computing1 Phytopathology1 molecular genetic systems1 gene networks1 RNA-Seq1 Stem cell1 Human-Computer Interaction1 Lipids1 Analytical chemistry1 Data curation1 Cancer research1 pathogen host interaction1 Natural Products1 Agile development1 Docker1 alternative splicing1 biocatalysis1 Metabolic Signaling1 transcriptional regulation1 Alga1 Organic residues1 plant growth1 Environmental toxicology1 reprogramming1 AI1 GMP1 GLP1 COVID-191 Network Analysis1 Parameter estimation1 Ontology1 Data Modelling1 Project Management1 Pathway Curation1 Pathway Analysis1 Distributed Systems1 SARS-CoV 21 drought1 plant ecophysiology1 quantitative genetics1 models1 phenotyping1 Table Curation1 Plant sciences1 crude oil1 Fisheries1 Freshwater1 Ecosystem services1 Reservoir1 Artificial Intelligence1 More...

Matlab12 Python10 Java9 R9 Computational Systems Biology8 Molecular Biology7 Data Management7 Databases7 ODE6 Bioinformatics5 Transcriptomics5 Fluorescence and confocal microscopy5 Microbiology4 Cell and tissue culture4 Copasi4 Workflows4 Microarray analysis4 Stochastic models4 Dynamic modelling4 Molecular biology techniques (RNA/DNA/Protein)4 SEEK4 Biochemistry and protein analysis3 Cytometry and fluorescent microscopy3 Fermentation3 Mass spectrometry3 Ruby on Rails3 Ontologies3 Metabolic Engineering3 Flow cytometry3 semantic web3 Javascript3 Parameter estimation3 Biochemistry2 Computational and theoretical biology2 Genetic modification2 Genomics2 Proteomics2 Isolation purification and separation2 Perl2 Web services2 Mathematica2 Cytoscape2 Taverna2 Ruby2 linux2 quantitative western blot analyses2 quantitative western blot analysis2 Mass spectrometry (LC-MS/MS)2 Cell culture2 microbiology techniques2 Machine Learning2 COBRA toolbox2 Model selection2 SABIO-RK2 Data Integration2 Kinetic Modeling2 Genetics1 Cell biology1 Genetic analysis1 Metabolomics1 SBML1 Algebraic equations1 PCR1 Chip-chip1 Spring1 stimulus response experiments1 differential algebraic equations1 J2EE1 qPCR1 MySQL1 including: - Dynamic modelling - Parameter estimation - Optimal experimental design - Dynamic optimization1 Deterministic models1 FACS1 sensitivity analysis1 Data analysis1 Flux balance analysis1 BioMart1 HTML1 Fluorescence microscopy1 molecular biological techniques (RNA/DNA techniques)1 GC and LC analysis of metabolites1 qRT-PCR1 RNA / DNA Techniques1 Bioreactor experiments/Fermentation (batch1 network theory1 Pathway Tools1 model prediction testing1 reverse engineering1 computational platform development1 metabolic netwlrk visualization1 Grails web development framework1 SABIO-RK database1 RightField1 standards1 Protege1 c++1 bash1 Surface sensitive techniques1 octave1 Scilab1 Individual-based models1 Identifiability analysis1 protein analysis1 life-cell imaging1 CalMorph1 GLM1 Activity-based Protein Profiling1 pulse SILAC1 micro-Computed Tomography1 imaging1 AWS1 Research Objects1 Vaadin1 Data Science1 analytics1 MS imaging1 FT-ICR-MS1 Field Flow Fractionation1 Jupyter1 libRoadrunner1 Docker1 Latex1 Galaxy1 electrophysiology1 super resolution microscopy1 iPSC culture1 Photoactivated localization microscopy1 Shell scripting1 metadata1 omics analysis1 Constraint-based analysis1 sensors1 high throughput phenotyping1 MIAPPE1 Light Microscopy1 Snakemake1 More...