Models
What is a Model?Filters
Simplified model file for PLaSMo accession ID PLM_6, version 3 (use simplified if your software cannot read the file, e.g. Sloppy Cell)
Creators: BioData SynthSys, Alexandra Pokhilko, Andrew Millar
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_6, version 2
Creators: BioData SynthSys, Alexandra Pokhilko, Andrew Millar
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Simplified model file for PLaSMo accession ID PLM_6, version 2 (use simplified if your software cannot read the file, e.g. Sloppy Cell)
Creators: BioData SynthSys, Alexandra Pokhilko, Andrew Millar
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_6, version 1
Creators: BioData SynthSys, Alexandra Pokhilko, Andrew Millar
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Simplified model file for PLaSMo accession ID PLM_6, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)
Creators: BioData SynthSys, Alexandra Pokhilko, Andrew Millar
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Simplified model file for PLaSMo accession ID PLM_47, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)
Creators: BioData SynthSys, Maria-Luisa Guerriero
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_47, version 1
Creators: BioData SynthSys, Maria-Luisa Guerriero
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_2, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Model type: Not specified
Model format: Simile XML v3
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_79, version 1
Creators: BioData SynthSys, Daniel Seaton
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Simplified model file for PLaSMo accession ID PLM_79, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)
Creators: BioData SynthSys, Daniel Seaton
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_78, version 1
Creators: BioData SynthSys, Daniel Seaton
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Simplified model file for PLaSMo accession ID PLM_78, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)
Creators: BioData SynthSys, Daniel Seaton
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Simplified model file for PLaSMo accession ID PLM_77, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)
Creators: BioData SynthSys, Daniel Seaton
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_77, version 1
Creators: BioData SynthSys, Daniel Seaton
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_41, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Model type: Not specified
Model format: Simile XML v3
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_32, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Model type: Not specified
Model format: Simile XML v3
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_40, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Model type: Not specified
Model format: Simile XML v3
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_38, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Model type: Not specified
Model format: Simile XML v3
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_39, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Model type: Not specified
Model format: Simile XML v3
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_36, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Model type: Not specified
Model format: Simile XML v3
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_37, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Model type: Not specified
Model format: Simile XML v3
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_34, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Model type: Not specified
Model format: Simile XML v3
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_35, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Model type: Not specified
Model format: Simile XML v3
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_12, version 1
Creators: BioData SynthSys, Robert Muetzelfeldt
Submitter: BioData SynthSys
Model type: Not specified
Model format: Simile XML v3
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_33, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Model type: Not specified
Model format: Simile XML v3
Environment: Not specified
Here is a kinetic model (in COPASI format) of L. lactis glycolysis.
Creator: Mark Musters
Submitter: Mark Musters
Model type: Ordinary differential equations (ODE)
Model format: Copasi
Environment: Copasi
Butanol producing iNS142, redesigned using RobOKoD.
Creator: Natalie Stanford
Submitter: Natalie Stanford
Model type: Metabolic network
Model format: SBML
Environment: Matlab
This record includes Matlab and Simile format versions of the Arabidopsis Framework Model version 1, FMv1 (Chew et al, PNAS 2014; http://www.pnas.org/content/early/2014/08/27/1410238111), copied from the PlaSMo resource (www.plasmo.ed.ac.uk), PLM_ID=76. The model description is in the Supplementary Materials of the publication, which should be uploaded somewhere here also but I don't see how to do it.
The FMv1 links the following sub-models:
- Arabidopsis leaf carbohydrate model (Rasse and ...
Creators: Andrew Millar, Yin Hoon Chew
Submitter: Andrew Millar
Model type: Not specified
Model format: Matlab package
Environment: Matlab
Creator: Jacky Snoep
Submitter: Jacky Snoep
Model type: Ordinary differential equations (ODE)
Model format: SBML
Environment: JWS Online
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
Model type: Ordinary differential equations (ODE)
Model format: SBML
Environment: Not specified