Arabidopsis_clock_extend - PLM_6, version 1

The first version of the model corresponds to the one published in Pokhilko et al Mol Syst Biol 2010, which is also presented on the Mol. Syst. Biol. website and was submitted to the Biomodels database. Note: minor errors in published supplementary information are documented in a file attached to version 1; the published SBML files are correct. The second version has some names slightly modified for compatibility with the SBSI platform. Both first and second versions have values of  "dawn" fixed to 0 and "dusk" to 12 in the light function. The third version has parameters "dawn" and "dusk" in equation for light function, which allows to simulate various photoperiods by changing parameter "dusk".

Comments


The model is accepted for publication in Mol. Syst. Biol. 2010: "Data assimilation constrains new connections and components in a complex, eukaryotic circadian clock model", A. Pokhilko, S. K. Hodge, K. Stratford, K. Knox, K. D. Edwards, A. W. Thomson, T. Mizuno,  A. J. Millar. The simplified and detailed schemes of the reactions are shown in Supplementary files.


2010-07-26 18:11:03 21 apokhilk sashapokh@gmail.com

Version Comments


The model is published in Mol. Syst. Biol. 2010: "Data assimilation constrains new connections and components in a complex, eukaryotic circadian clock model", A. Pokhilko, S. K. Hodge, K. Stratford, K. Knox, K. D. Edwards, A. W. Thomson, T. Mizuno,  A. J. Millar. PMID: 20865009.



The simplified and detailed schemes of the reactions are shown in Supplementary files, attached to this record.



Minor errors in the published supplementary information are described in another Attached file.




Originally submitted to PLaSMo on 2010-05-04 11:20:49

SEEK ID: https://fairdomhub.org/assays/835

Modelling Analysis

BioData SynthSys

Projects: PlaSMo model repository

Investigation: Pokhilko, Alexandra

Study: Arabidopsis_clock_extend - PLM_6

Biological problem addressed: Gene Regulatory Network

Organisms: No organisms

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Alexandra Pokhilko, Andrew Millar
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Created: 10th Jan 2019 at 17:40

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