Arabidopsis_clock_2012_TOC1_repressor - PLM_49, version 2

Millar lab working model, extends the Arabidopsis clock model by incorporating multiple sites of inhibition of clock gene expression by TOC1. Model is included into submitted publication "Global Mapping at the Core of the Arabidopsis Circadian Clock Defines a Novel Network Structure of the Oscillator" with Paloma Mas Version 1 has two errors corrected in version 2. This private record is now superseded by the published version, which is public as PLM_70.

Version Comments

This is a tidied-up and corrected SBML file, lacking the CellDesigner sinks and sources of version 1. Two minor errors from version 1 are also corrected:

  1. M37 was used twice, in error

  2. M9 and m10 were local to cE3n_degr, not global.

Version 2 will simulate in Copasi and in SBSI, and will also compile for optimisation on SBSI.

A corresponding Copasi file is attached.

Originally submitted to PLaSMo on 2011-12-29 14:36:56


Modelling Analysis

BioData SynthSys

Projects: PlaSMo model repository

Investigation: Pokhilko, Alexandra

Study: Arabidopsis_clock_2012_TOC1_repressor - PLM_49

Biological problem addressed: Gene Regulatory Network

Organisms: No organisms

help Contributor and Creators

help Other creators

Alexandra Pokhilko, Andrew Millar

Views: 269

Created: 10th Jan 2019 at 17:40

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