Arabidopsis_clock_extend - PLM_6
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The first version of the model corresponds to the one published in Pokhilko et al Mol Syst Biol 2010, which is also presented on the Mol. Syst. Biol. website and was submitted to the Biomodels database. Note: minor errors in published supplementary information are documented in a file attached to version 1; the published SBML files are correct. The second version has some names slightly modified for compatibility with <a href="http://www.sbsi.ed.ac.uk">the SBSI platform</a>. Both first and second versions have values of "dawn" fixed to 0 and "dusk" to 12 in the light function. The third version has parameters "dawn" and "dusk" in equation for light function, which allows to simulate various photoperiods by changing parameter "dusk".<br><br><strong>Originally submitted to PLaSMo on 2010-05-04 11:20:49</strong>
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Alexandra Pokhilko, Andrew Millar
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Created: 10th Jan 2019 at 16:38
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Projects: PlaSMo model repository
Institutions: University of Edinburgh
SynthSys is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE).
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository
Web page: http://www.synthsys.ed.ac.uk
What is PlaSMo? PlaSMo stands for Plant Systems-biology Modelling Ensuring the achievements of yesterday's Mathematical Modellers will be available for the Systems Biologists of tomorrow.
Our aims
To identify plant mathematical models useful to the UK plant systems biology community, which are currently in a variety of legacy formats and in danger of being lost To represent these models in a declarative XML-based format, which is closer to the systems biology standard SBML To evaluate the behaviour ...
Programme: SynthSys
Public web page: Not specified
Collection of models submitted to PLaSMo by Alexandra Pokhilko and automatically transferred to FAIRDOM Hub.
Submitter: BioData SynthSys
Studies: Arabidopsis_clock_2011 - PLM_43, Arabidopsis_clock_2012_TOC1_repressor - PLM_49, Arabidopsis_clock_extend - PLM_6
Assays: Arabidopsis_clock_2011 - PLM_43, version 1, Arabidopsis_clock_2011 - PLM_43, version 2, Arabidopsis_clock_2011 - PLM_43, version 3, Arabidopsis_clock_2011 - PLM_43, version 4, Arabidopsis_clock_2011 - PLM_43, version 5, Arabidopsis_clock_2011 - PLM_43, version 6, Arabidopsis_clock_2011 - PLM_43, version 7, Arabidopsis_clock_2011 - PLM_43, version 8, Arabidopsis_clock_2011 - PLM_43, version 9, Arabidopsis_clock_2012_TOC1_repressor - PLM_49, version 1, Arabidopsis_clock_2012_TOC1_repressor - PLM_49, version 2, Arabidopsis_clock_extend - PLM_6, version 1, Arabidopsis_clock_extend - PLM_6, version 2, Arabidopsis_clock_extend - PLM_6, version 3
The first version of the model corresponds to the one published in Pokhilko et al Mol Syst Biol 2010, which is also presented on the Mol. Syst. Biol. website and was submitted to the Biomodels database. Note: minor errors in published supplementary information are documented in a file attached to version 1; the published SBML files are correct. The second version has some names slightly modified for compatibility with the SBSI platform. Both first and second versions have values of "dawn" fixed ...
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Pokhilko, Alexandra
The first version of the model corresponds to the one published in Pokhilko et al Mol Syst Biol 2010, which is also presented on the Mol. Syst. Biol. website and was submitted to the Biomodels database. Note: minor errors in published supplementary information are documented in a file attached to version 1; the published SBML files are correct. The second version has some names slightly modified for compatibility with the SBSI platform. Both first and second versions have values of "dawn" fixed ...
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Pokhilko, Alexandra
The first version of the model corresponds to the one published in Pokhilko et al Mol Syst Biol 2010, which is also presented on the Mol. Syst. Biol. website and was submitted to the Biomodels database. Note: minor errors in published supplementary information are documented in a file attached to version 1; the published SBML files are correct. The second version has some names slightly modified for compatibility with the SBSI platform. Both first and second versions have values of "dawn" fixed ...
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Pokhilko, Alexandra
Data file for PLaSMo accesssion ID PLM_6, version 2
Creators: BioData SynthSys, Alexandra Pokhilko, Andrew Millar
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_6, version 1
Creators: BioData SynthSys, Alexandra Pokhilko, Andrew Millar
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_6, version 2
Creators: BioData SynthSys, Alexandra Pokhilko, Andrew Millar
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_6, version 1
Creators: BioData SynthSys, Alexandra Pokhilko, Andrew Millar
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_6, version 1
Creators: BioData SynthSys, Alexandra Pokhilko, Andrew Millar
Submitter: BioData SynthSys
Originally submitted model file for PLaSMo accession ID PLM_6, version 3
Creators: BioData SynthSys, Alexandra Pokhilko, Andrew Millar
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Simplified model file for PLaSMo accession ID PLM_6, version 3 (use simplified if your software cannot read the file, e.g. Sloppy Cell)
Creators: BioData SynthSys, Alexandra Pokhilko, Andrew Millar
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_6, version 2
Creators: BioData SynthSys, Alexandra Pokhilko, Andrew Millar
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Simplified model file for PLaSMo accession ID PLM_6, version 2 (use simplified if your software cannot read the file, e.g. Sloppy Cell)
Creators: BioData SynthSys, Alexandra Pokhilko, Andrew Millar
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_6, version 1
Creators: BioData SynthSys, Alexandra Pokhilko, Andrew Millar
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Simplified model file for PLaSMo accession ID PLM_6, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)
Creators: BioData SynthSys, Alexandra Pokhilko, Andrew Millar
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
