arabidopsis_clock_biopepa - PLM_47, version 1

Model of the arabidopsis circadian clock obtained from the Bio-PEPA model. The model is based on Alexandra Pokhilko's 2010 deterministic model and includes a scaling factor omega to translate from continuous "concentrations" to discrete amounts. Light function is a smooth function switching between 0 and 1, and is parameterised in order to allow to automate experimentation with different light conditions and photoperiods.

Related Publications
Maria Luisa Guerriero, Alexandra Pokhilko, Aurora Piñas Fernández, Karen J. Halliday, Andrew J. Millar, and Jane Hillston (2011). Stochastic properties of the plant circadian clock. J. R. Soc. Interface. Retrieved from: http://rsif.royalsocietypublishing.org/content/early/2011/08/26/rsif.2011.0378.abstract

Originally submitted to PLaSMo on 2011-09-08 17:35:44

SEEK ID: https://fairdomhub.org/assays/834

Modelling Analysis

BioData SynthSys

Projects: PlaSMo model repository

Investigation: Guerriero, Maria-Luisa

Study: arabidopsis_clock_biopepa - PLM_47

Biological problem addressed: Gene Regulatory Network

Organisms: No organisms

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Maria-Luisa Guerriero
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Created: 10th Jan 2019 at 17:40

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