Frequency doubling in the cyanobacterial circadian clock
SEEK ID: https://fairdomhub.org/investigations/215
Projects: Molecular Systems Biology
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Projects: PSYSMO, MOSES, SysMO DB, SysMO-LAB, SulfoSys, SulfoSys - Biotec, Whole body modelling of glucose metabolism in malaria patients, FAIRDOM, Molecular Systems Biology, COMBINE Multicellular Modelling, HOTSOLUTE, Steroid biosynthesis, Yeast glycolytic oscillations, Computational pathway design for biotechnological applications, SCyCode The Autotrophy-Heterotrophy Switch in Cyanobacteria: Coherent Decision-Making at Multiple Regulatory Layers, Project Coordination, WP 3: Drug release kinetics study, Glucose metabolism in cancer cell lines
Institutions: Manchester Centre for Integrative Systems Biology, University of Manchester, University of Stellenbosch, University of Manchester - Department of Computer Science, Stellenbosch University
This programme is used to store published data files that are not available in other FAIRDOM projects. We specifically store information for journals that we collaborate with for technical curation of mathematical models. These files are used in COMBINE archives to reproduce journal figures.
Projects: Molecular Systems Biology
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The Molecular Systems Biology project holds information for reproducing simulation figures in the journal. This can include experimental data files, model files and manuscript information.
Programme: Journals
Public web page: http://msb.embopress.org
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C Numerical simulations of the RpoD6 wild-type network show a shoulder of expression trailing the main peak (red line). All the parameters describing the clock and SigC are as in Fig 4B, and only the threshold of activation of the rpoD6 promoter by the clock was modified. Numerical simulations of a SigC knock-out model (in which the terms representing the regulation of RpoD6 by SigC are set to zero) show only single-peaked oscillations (blue line). D The incoherent feedforward loop circuit that ...
Submitter: Jacky Snoep
Investigation: Martins et al (2016) Molecular Systems Biology
Assays: Frequency doubling in the cyanobacterial circadian clock
Snapshots: No snapshots
Numerical simulations of the wild-type network show double peaks of expression (red line), and numerical simulations of a SigC knock-out model (in which the terms representing the regulation of PsbAI by SigC are set to zero) show only single-peaked oscillations (blue line)..
SED-ML simulation https://jjj.bio.vu.nl/models/experiments/martins2016_fig4b/simulate
Submitter: Jacky Snoep
Investigation: Martins et al (2016) Molecular Systems Biology
Assays: Frequency doubling in the cyanobacterial circadian clock
Snapshots: No snapshots
Submitter: Jacky Snoep
Biological problem addressed: Model Analysis Type
Investigation: Martins et al (2016) Molecular Systems Biology
Organisms: No organisms
Models: Frequency doubling in the cyanobacterial circad...
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Submitter: Jacky Snoep
Biological problem addressed: Model Analysis Type
Investigation: Martins et al (2016) Molecular Systems Biology
Organisms: No organisms
Models: Frequency doubling in the cyanobacterial circad...
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Creator: Jacky Snoep
Submitter: Jacky Snoep
Model type: Ordinary differential equations (ODE)
Model format: SBML
Environment: JWS Online
Organism: Not specified
Investigations: Martins et al (2016) Molecular Systems Biology
Studies: Figure 4B: A minimal mathematical model, contai..., Figure 6C and D: The clock-sigC circuit represe...
Assays: Frequency doubling in the cyanobacterial circad..., Frequency doubling in the cyanobacterial circad...
Abstract (Expand)
Authors: Bruno MC Martins, Arijit K Das, Liliana Antunes, James CW Locke
Date Published: 22nd Dec 2016
Publication Type: Not specified
Citation: Mol Syst Biol 12(12) : 896