Arabidopsis - starch and the circadian clock, Model 3 (Seaton et al., 2013) - PLM_79, version 1

SynthSys is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE).

What is PlaSMo? PlaSMo stands for Plant Systems-biology Modelling Ensuring the achievements of yesterday's Mathematical Modellers will be available for the Systems Biologists of tomorrow.

Our aims

To identify plant mathematical models useful to the UK plant systems biology community, which are currently in a variety of legacy formats and in danger of being lost

To represent these models in a declarative XML-based format, which is closer to the systems biology standard SBML To evaluate the behaviour ...

Collection of models submitted to PLaSMo by Daniel Seaton and automatically transferred to FAIRDOM Hub.

A model of the circadian regulation of starch turnover, as published in Seaton, Ebenhoeh, Millar, Pokhilko, "Regulatory principles and experimental approaches to the circadian control of starch turnover",  J. Roy. Soc. Interface, 2013. This model is referred to as "Model Variant 3".Related PublicationsSeaton, Ebenhoeh, Millar, Pokhilko (2013). Regulatory principles and experimental approaches to the circadian control of starch turnover. Journal of the Royal Society Interface. Originally submitted ...

Data file for PLaSMo accesssion ID PLM_79, version 1

Originally submitted model file for PLaSMo accession ID PLM_79, version 1

Simplified model file for PLaSMo accession ID PLM_79, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)