Mark Musters
I'm a modeller, specialized in kinetic modeling of biochemical networks. My focus in the SysMO-LAB consortium is on creating models of Lactococcus lactis glycolysis and couple this to other related lactic acid bacteria like Streptococcus pyogenes and Enterococcus faecalis. Besides kinetic modeling, I'm also interested in combining various modeling techniques (genome-scale modeling, qualitative modeling).
SEEK ID: https://fairdomhub.org/people/52
Location:
Netherlands
Expertise: Reactor models, dynamics of biological networks., Mathematical modelling, Bioinformatics
Tools: SQL, Material balance based modeling, Mathematica, Matlab, Copasi, JWS Online, Algebraic equations, Linear equations, Partial differential equations, ODE, SBML, Model organisms, Metabolomics, Cell biology, Computational and theoretical biology, Molecular Biology
ORCID: Not specified
Project roles
Pal
Mark's tagsRelated items
Comparative Systems Biology: Lactic Acid Bacteria
Programme: SysMO
Public web page: http://www.sysmo.net/index.php?index=57
Lumped kinetic model of L. lactis glycolysis, formulated with ordinary differential equations. Simulations are in line with experimental data
Contributor: Mark Musters
Assay type: Experimental Assay Type
Technology type: Technology Type
Snapshots: No snapshots
Global sensitivity analysis of a kinetic model to determine the sensitivities for each parameter, over a wide parameter range. We used the elementary effects method.
Contributor: Mark Musters
Assay type: Experimental Assay Type
Technology type: Technology Type
Snapshots: No snapshots
Here is a kinetic model (in COPASI format) of L. lactis glycolysis.
Creator: Mark Musters
Contributor: Mark Musters
Model type: Ordinary differential equations (ODE)
Model format: Copasi
Environment: Copasi
DownloadSBML description of L. lactis glycolysis. Same as the uploaded Copasi file
Creator: Mark Musters
Contributor: Mark Musters
Model type: Ordinary differential equations (ODE)
Model format: SBML
Environment: Not specified
The kinetic model includes sugar uptake, degradation of glucose into pyruvate and the fermentation of pyruvate.
Creators: Jennifer Levering, Mark Musters
Contributor: Jennifer Levering
Model type: Ordinary differential equations (ODE)
Model format: SBML
Environment: JWS Online
Abstract (Expand)
Authors: None
Date Published: 14th Feb 2012
Journal: The FEBS journal
