Details about this organism
Synonyms (0)None defined
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Strain details
Name | Provider name | Provider's strain ID | Genotypes | Phenotypes | Synonym | Comments | Based on |
---|---|---|---|---|---|---|---|
V583 | Not specified | Not specified | wild-type | wild-type | Not specified | None | Not specified |
ATCC29200 | Not specified | Not specified | wild-type | wild-type | Not specified | None | Not specified |
DS5 | Not specified | Not specified | wild-type | wild-type | Not specified | None | Not specified |
TX0012 | Not specified | Not specified | wild-type | wild-type | Not specified | None | Not specified |
Related items
SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".
The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.
Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...
Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep
Web page: http://sysmo.net/
Comparative Systems Biology: Lactic Acid Bacteria
Programme: SysMO
Public web page: http://www.sysmo.net/index.php?index=57
Measurements on Km, Vmax and allosteric activation or inhibition of the heterologously expressed (E. coli) and purifiied main L-lactate dehydrogenase
Submitter: Martijn Bekker
Assay type: Enzymatic Assay
Technology type: Enzymatic Activity Measurements
Investigation: Investigation of glycolysis and pyruvate branch...
Organisms: Lactobacillus plantarum : WCFS1 (wild-type / wild-type), Enterococcus faecalis : V583 (wild-type / wild-type), Streptococcus pyogenes : M49 (591) (wild-type / wild-type)
SOPs: Measurement of LDH activity
Data files: The effects of fructose-1,6-bisphosphate, phosp...
Snapshots: No snapshots
L. lactis, E. faecalis and S. pyogenes are referred to as LAB because of the fact that in the presence of glucose lactate is produced as the main fermentation product . This metabolic pathway is relatively inefficient, since only 2 ATP are generated from one glucose molecule. All three LAB possess the genetic make up for mixed acid fermentation, a more effective way of fermentation generating 3 ATP per molecule of glucose. All three genomes reveal (at least) two genes encoding a lactate dehydrogenase ...
Submitter: Martijn Bekker
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Investigation of glycolysis and pyruvate branch...
Organisms: Lactococcus lactis, Streptococcus pyogenes : M49 (591) (wild-type / wild-type), Enterococcus faecalis : V583 (wild-type / wild-type)
SOPs: No SOPs
Data files: Maximal specific growth rates of the three lact...
Snapshots: No snapshots
L. lactis, S. pyogenes and E. faecalis were grown in C-limited chemostat cultures at various pH's and dilution rates. General flux distribution, yields and other physiological factors were studied.
Submitter: Martijn Bekker
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Investigation of glycolysis and pyruvate branch...
Organisms: Lactococcus lactis, Streptococcus pyogenes : M49 (591) (wild-type / wild-type), Enterococcus faecalis : V583 (wild-type / wild-type)
SOPs: No SOPs
Data files: Characterization of flux distribution and gener..., Characterization of flux distribution and gener..., Characterization of flux distribution and gener...
Snapshots: No snapshots
In this experiment we glucose-pulsed an E. faecalis cultures re-suspended in 100 mM MES buffer at pH 6.5. Samples were taken in time to study intra- and extracellular metabolites. These data are used to construct a kinetic model of the catqabolism of E. faecalis
Submitter: Martijn Bekker
Assay type: Metabolomics
Technology type: Progressive Curve Experiment
Investigation: The Attic
Organisms: Enterococcus faecalis : V583 (wild-type / wild-type)
SOPs: SOP 6 Analysis of intracellular metabolites, SOP 7 Glucose-pulse experiments
Data files: No Data files
Snapshots: No snapshots
Metabolic network of Enterococcus faecalis including primary metabolism, polysaccharide metabolism, purine and pyrimidine biosoynthesis, teichoic acid biosynthesis, fatty acid and phospholipid bioynthesis, amino acid metabolism, vitamins and cofactors
Submitter: Nadine Veith
Biological problem addressed: Metabolic Network
Investigation: Investigation of glycolysis and pyruvate branch...
Organisms: Enterococcus faecalis : V583 (wild-type / wild-type)
Models: Genome-scale metabolic model of Enterococcus fa...
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Despite high similarity in sequence and catalytic properties, the L-lactate dehydrogenases (LDH) in lactic acid bacteria (LAB) display differences in their regulation which may arise from their adaptation to different habitats. We combined experimental and computational approaches to investigate the effects of fructose-1,6-bisphosphate (FBP), phosphate (Pi) and ionic strength (NaCl concentration) on 6 LDHs from 4 LABs studied at pH 6 and pH 7. We find: (1) The extent of activation by FBP (Kact) ...
Submitter: Anna Feldman-Salit
Biological problem addressed: Metabolism
Investigation: Investigation of glycolysis and pyruvate branch...
Organisms: Lactococcus lactis, Streptococcus pyogenes, Enterococcus faecalis, Lactobacillus plantarum
Models: Part 1: Comparative modeling of 3D structures o..., Part 2: Computation of electrostatic potentials..., Part 3: Comparison of electrostatic potentials ..., Part 4: Activation / Inhibition Effect on LDHs ..., Part 5: Algorithm to computationally estimate t...
SOPs: No SOPs
Data files: 3D-sturctures of Lactate Dehydrogenase from 4 L..., Activation / Inhibition of 4 LDH enzymes in the..., Comparison of electrostatic potentials of LDH e..., Electrostatic potentials of four LDH enzymes fr..., Example for the binding energy computation of p..., Measurements on kinetics of L-LDHs from differe..., The effects of fructose-1,6-bisphosphate, phosp...
Snapshots: No snapshots
Submitter: Martijn Bekker
Provider Name: Not specified
Provider's strain ID: Not specified
Organism: Enterococcus faecalis
Genotypes: wild-type
Phenotypes: wild-type
Comment: Not specified
Submitter: Not available
Provider Name: Not specified
Provider's strain ID: Not specified
Organism: Enterococcus faecalis
Genotypes: wild-type
Phenotypes: wild-type
Comment: Not specified
Submitter: Not available
Provider Name: Not specified
Provider's strain ID: Not specified
Organism: Enterococcus faecalis
Genotypes: wild-type
Phenotypes: wild-type
Comment: Not specified
Submitter: Not available
Provider Name: Not specified
Provider's strain ID: Not specified
Organism: Enterococcus faecalis
Genotypes: wild-type
Phenotypes: wild-type
Comment: Not specified
A reconstruction of the cellular metabolism of the opportunistic human pathogen Enterococcus faecalis V583 represented as stoichiometric model and analysed using constraint-based modelling approaches
Creators: Nadine Veith, Margrete Solheim, Koen van Grinsven, Jennifer Levering, Jeroen Hugenholtz, Helge Holo, Ingolf Nes, Bas Teusink, Ursula Kummer, Brett G Olivier, Ruth Grosseholz
Submitter: Nadine Veith
Model type: Linear equations
Model format: SBML
Environment: Not specified
Organism: Enterococcus faecalis
Investigations: Investigation of glycolysis and pyruvate branch...
Abstract (Expand)
Authors: N. Veith, M. Solheim, K. W. van Grinsven, B. G. Olivier, J. Levering, R. Grosseholz, J. Hugenholtz, H. Holo, I. Nes, B. Teusink, U. Kummer
Date Published: 19th Dec 2014
Publication Type: Not specified
PubMed ID: 25527553
Citation: Appl Environ Microbiol. 2015 Mar 1;81(5):1622-33. doi: 10.1128/AEM.03279-14. Epub 2014 Dec 19.
Abstract (Expand)
Authors: , , , , Anja Pritzschke, Nikolai Siemens, , ,
Date Published: 25th Nov 2010
Publication Type: Not specified
PubMed ID: 21097579
Citation: