Here you will find all pre-liminary data
SEEK ID: https://fairdomhub.org/studies/53
Projects: SysMO-LAB
Study position:
Experimentalists: Martijn Bekker
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Created: 11th Jun 2010 at 08:46
Last updated: 12th May 2016 at 15:55
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Institutions: University of Amsterdam
Expertise: Microbiology, Biochemistry, Molecular Biology, Escherichia coli, HPLC
Tools: Biochemistry, Molecular Biology, Fermentation, Chromatography
Martijn Bekker (1979) was born in Amstelveen (The Netherlands). He started his studies in biology in 1997 at the University of Amsterdam, and graduated in 2003 with specializations in molecular microbiology and in immunology. The internships during his undergraduate studies were carried out in the labs of Prof. dr. B. Oudega (VU, Amsterdam, The Netherlands) and Prof. dr. F. Heffron (OHSU, Portland, Oregon, USA). He continued with his graduate studies in 2003 in the Laboratory for Molecular Microbial ...
SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".
The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.
Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...
Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep
Web page: http://sysmo.net/
Comparative Systems Biology: Lactic Acid Bacteria
Programme: SysMO
Public web page: http://www.sysmo.net/index.php?index=57
Here SYSMO-LAB put all there pre-liminary data files or models ordered per person and project
Submitter: Martijn Bekker
Studies: Pre-liminary data from Martijn Bekker, Pyruvate formate-lyase (PFL), allosteric regulation of pyruvate kinase
Assays: Characterization of enzymes involved in butanediol formation, Kinetic behavior of intracellular metabolites of E. faecalis upon a gluc..., Kinetic behavior of intracellular metabolites of L. lactis upon a glucos..., Pyruvate formate-lyase (PFL): literature review, structure analysis and ..., literature values for allosteric regulation of pyruvate kinase
Snapshots: No snapshots
Enzymes involved in butanediol formation from pyruvate in L. Lactis and E. faecalis were characterized with respect to their Km's for their substrates and their Vmaxes
Submitter: Martijn Bekker
Assay type: Experimental Assay Type
Technology type: Initial Rate Experiment
Investigation: The Attic
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
In this experiment we glucose-pulsed an E. faecalis cultures re-suspended in 100 mM MES buffer at pH 6.5. Samples were taken in time to study intra- and extracellular metabolites. These data are used to construct a kinetic model of the catqabolism of E. faecalis
Submitter: Martijn Bekker
Assay type: Metabolomics
Technology type: Progressive Curve Experiment
Investigation: The Attic
Organisms: Enterococcus faecalis : V583 (wild-type / wild-type)
SOPs: SOP 6 Analysis of intracellular metabolites, SOP 7 Glucose-pulse experiments
Data files: No Data files
Snapshots: No snapshots
In this experiment we glucose-pulsed an L. lactiss cultures re-suspended in 100 mM MES buffer at pH 6.5. Samples were taken in time to study intra- and extracellular metabolites. These data are used to construct a kinetic model of the catabolism of E. L. lactis
Submitter: Martijn Bekker
Assay type: Metabolomics
Technology type: Enzymatic Activity Measurements
Investigation: The Attic
Organisms: No organisms
SOPs: SOP 6 Analysis of intracellular metabolites, SOP 7 Glucose-pulse experiments
Data files: No Data files
Snapshots: No snapshots
Creator: Martijn Bekker
Submitter: The JERM Harvester
Investigations: Investigation of glycolysis and pyruvate branch..., The Attic
Studies: Comparative modeling and phosphate dependence f..., Pre-liminary data from Martijn Bekker
Assays: Glucose pulsed L. lactis, Kinetic behavior of intracellular metabolites o..., Kinetic behavior of intracellular metabolites o...
Creator: Martijn Bekker
Submitter: The JERM Harvester
Investigations: Investigation of glycolysis and pyruvate branch..., The Attic
Studies: Comparative modeling and phosphate dependence f..., Pre-liminary data from Martijn Bekker
Assays: Glucose pulsed S. pyogenes, Kinetic behavior of intracellular metabolites o..., Kinetic behavior of intracellular metabolites o...