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Strain details
Name | Provider name | Provider's strain ID | Genotypes | Phenotypes | Synonym | Comments | Based on |
---|---|---|---|---|---|---|---|
M49 (591) | Not specified | Not specified | wild-type | wild-type | Not specified | None | Not specified |
Related items
SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".
The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.
Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...
Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep
Web page: http://sysmo.net/
Comparative Systems Biology: Lactic Acid Bacteria
Programme: SysMO
Public web page: http://www.sysmo.net/index.php?index=57
S. pyogenes was grown in rich medium, strongly concentrated and glucose-pulsed in a MES buffer. Intracellular metabolite concentration is followed in time.
Submitter: Martijn Bekker
Assay type: Metabolomics
Technology type: Technology Type
Investigation: Investigation of glycolysis and pyruvate branch...
Organisms: Streptococcus pyogenes
SOPs: Analysis of organic acid by HPLC, Protocol for glucose perturbations, Quenching of lactic acid bacteria, SOP 6 Analysis of intracellular metabolites, SOP 8 Glucose-pulse experiments (adapted for S....
Data files: Glucose pulsed S pyogenes
Snapshots: No snapshots
Measurements on Km, Vmax and allosteric activation or inhibition of the heterologously expressed (E. coli) and purifiied main L-lactate dehydrogenase
Submitter: Martijn Bekker
Assay type: Enzymatic Assay
Technology type: Enzymatic Activity Measurements
Investigation: Investigation of glycolysis and pyruvate branch...
Organisms: Lactobacillus plantarum : WCFS1 (wild-type / wild-type), Enterococcus faecalis : V583 (wild-type / wild-type), Streptococcus pyogenes : M49 (591) (wild-type / wild-type)
SOPs: Measurement of LDH activity
Data files: The effects of fructose-1,6-bisphosphate, phosp...
Snapshots: No snapshots
L. lactis, E. faecalis and S. pyogenes are referred to as LAB because of the fact that in the presence of glucose lactate is produced as the main fermentation product . This metabolic pathway is relatively inefficient, since only 2 ATP are generated from one glucose molecule. All three LAB possess the genetic make up for mixed acid fermentation, a more effective way of fermentation generating 3 ATP per molecule of glucose. All three genomes reveal (at least) two genes encoding a lactate dehydrogenase ...
Submitter: Martijn Bekker
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Investigation of glycolysis and pyruvate branch...
Organisms: Lactococcus lactis, Streptococcus pyogenes : M49 (591) (wild-type / wild-type), Enterococcus faecalis : V583 (wild-type / wild-type)
SOPs: No SOPs
Data files: Maximal specific growth rates of the three lact...
Snapshots: No snapshots
L. lactis, S. pyogenes and E. faecalis were grown in C-limited chemostat cultures at various pH's and dilution rates. General flux distribution, yields and other physiological factors were studied.
Submitter: Martijn Bekker
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Investigation of glycolysis and pyruvate branch...
Organisms: Lactococcus lactis, Streptococcus pyogenes : M49 (591) (wild-type / wild-type), Enterococcus faecalis : V583 (wild-type / wild-type)
SOPs: No SOPs
Data files: Characterization of flux distribution and gener..., Characterization of flux distribution and gener..., Characterization of flux distribution and gener...
Snapshots: No snapshots
Determination of essential amino acids for Streptococcus pyogenes
Submitter: Araz Zeyniyev
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Amino acid metabolism of four LAB species: Stre...
Organisms: Streptococcus pyogenes : M49 (591) (wild-type / wild-type)
SOPs: No SOPs
Data files: amino acid auxotrophy for streptococcus pyogenes
Snapshots: No snapshots
S. pyogenes wildetype, an arcA- and a glnA-deletion mutants were grown in CDM-LAB cultures at pH 6.5 and 7.5 and at a growth rate of 0.05
Submitter: Antje Sieg
Assay type: Experimental Assay Type
Technology type: HPLC
Investigation: Amino acid metabolism of four LAB species: Stre...
Organisms: Streptococcus pyogenes : M49 (591) (wild-type / wild-type)
SOPs: Analysis of organic acid by HPLC, SOP 2.1 Method for synthesis of LAB-medium used...
Data files: Characterization of chemostats from S. pyogenes...
Snapshots: No snapshots
In order to construct an in vivo-like buffer for S. pyogenes, the intracellular concentrations of Fe, K, Mg, Mn Na, P and S elements were determined via ICP-AES (inductively coupled plasma atomic emissionspectroscopy) method at the Institute of Land Use, University of Rostock. The samples for the analysis were obtained from a steady state culture grown on CDM-LAB with glucose.
Submitter: Araz Zeyniyev
Assay type: Metabolite Profiling
Technology type: Inductively Coupled Plasma Mass Spectrometry
Investigation: Amino acid metabolism of four LAB species: Stre...
Organisms: Streptococcus pyogenes : M49 (591) (wild-type / wild-type)
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Metabolic network of S. pyogenes including primary metabolism, polysaccharide metabolism, purine and pyrimidine biosoynthesis, teichoic acid biosynthesis, fatty acid and phospholipid bioynthesis, amino acid metabolism, vitamins and cofactors
Submitter: Jennifer Levering
Biological problem addressed: Metabolic Network
Investigation: Investigation of glycolysis and pyruvate branch...
Organisms: Streptococcus pyogenes : M49 (591) (wild-type / wild-type)
Models: Genome-scale model of Streptococcus pyogenes
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Despite high similarity in sequence and catalytic properties, the L-lactate dehydrogenases (LDH) in lactic acid bacteria (LAB) display differences in their regulation which may arise from their adaptation to different habitats. We combined experimental and computational approaches to investigate the effects of fructose-1,6-bisphosphate (FBP), phosphate (Pi) and ionic strength (NaCl concentration) on 6 LDHs from 4 LABs studied at pH 6 and pH 7. We find: (1) The extent of activation by FBP (Kact) ...
Submitter: Anna Feldman-Salit
Biological problem addressed: Metabolism
Investigation: Investigation of glycolysis and pyruvate branch...
Organisms: Lactococcus lactis, Streptococcus pyogenes, Enterococcus faecalis, Lactobacillus plantarum
Models: Part 1: Comparative modeling of 3D structures o..., Part 2: Computation of electrostatic potentials..., Part 3: Comparison of electrostatic potentials ..., Part 4: Activation / Inhibition Effect on LDHs ..., Part 5: Algorithm to computationally estimate t...
SOPs: No SOPs
Data files: 3D-sturctures of Lactate Dehydrogenase from 4 L..., Activation / Inhibition of 4 LDH enzymes in the..., Comparison of electrostatic potentials of LDH e..., Electrostatic potentials of four LDH enzymes fr..., Example for the binding energy computation of p..., Measurements on kinetics of L-LDHs from differe..., The effects of fructose-1,6-bisphosphate, phosp...
Snapshots: No snapshots
Submitter: Araz Zeyniyev
Provider Name: Not specified
Provider's strain ID: Not specified
Organism: Streptococcus pyogenes
Genotypes: wild-type
Phenotypes: wild-type
Comment: Not specified
Preliminary metabolic network of S. pyogenes including primary metabolism, polysaccharide metabolism, purine and pyrimidine biosoynthesis, teichoic acid biosynthesis, fatty acid and phospholipid bioynthesis, amino acid metabolism, vitamins and cofactors. The model still needs to be validated.
Creator: Jennifer Levering
Submitter: Jennifer Levering
Model type: Metabolic network
Model format: SBML
Environment: Not specified
Organism: Streptococcus pyogenes
Investigations: Investigation of glycolysis and pyruvate branch...
The kinetic model includes sugar uptake, degradation of glucose into pyruvate and the fermentation of pyruvate.
Creator: Jennifer Levering
Submitter: Jennifer Levering
Model type: Ordinary differential equations (ODE)
Model format: SBML
Environment: JWS Online
Organism: Streptococcus pyogenes
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Abstract (Expand)
Editor:
Date Published: 14th Feb 2012
Publication Type: Not specified
PubMed ID: 22325620
Citation:
Abstract (Expand)
Authors: , , , , Anja Pritzschke, Nikolai Siemens, , ,
Date Published: 25th Nov 2010
Publication Type: Not specified
PubMed ID: 21097579
Citation: