SEEK ID: https://fairdomhub.org/people/329
Location: Germany
ORCID: Not specified
Joined: 10th Jun 2010
Expertise: Not specified
Tools: Not specified
Related items
- Programmes (1)
- Projects (1)
- Institutions (1)
- Assays (1)
- Models (3)
- Publications (3)
- Presentations (3)
SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".
The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.
Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...
Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep
Web page: http://sysmo.net/
Comparative Systems Biology: Lactic Acid Bacteria
Programme: SysMO
Public web page: http://www.sysmo.net/index.php?index=57
Metabolic network of Enterococcus faecalis including primary metabolism, polysaccharide metabolism, purine and pyrimidine biosoynthesis, teichoic acid biosynthesis, fatty acid and phospholipid bioynthesis, amino acid metabolism, vitamins and cofactors
Submitter: Nadine Veith
Biological problem addressed: Metabolic Network
Investigation: Investigation of glycolysis and pyruvate branch...
Organisms: Enterococcus faecalis : V583 (wild-type / wild-type)
Models: Genome-scale metabolic model of Enterococcus fa...
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Creator: Nadine Veith
Submitter: Nadine Veith
Model type: Partial differential equations (PDE)
Model format: SBML
Environment: Not specified
Organism: Lactococcus lactis
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
A reconstruction of the cellular metabolism of the opportunistic human pathogen Enterococcus faecalis V583 represented as stoichiometric model and analysed using constraint-based modelling approaches
Creators: Nadine Veith, Margrete Solheim, Koen van Grinsven, Jennifer Levering, Jeroen Hugenholtz, Helge Holo, Ingolf Nes, Bas Teusink, Ursula Kummer, Brett G Olivier, Ruth Grosseholz
Submitter: Nadine Veith
Model type: Linear equations
Model format: SBML
Environment: Not specified
Organism: Enterococcus faecalis
Investigations: Investigation of glycolysis and pyruvate branch...
Structural models of the LAB PYKs of L. lactis, L. plantarum, S. pyogenes and E. faecalis including the "best" docking solutions of potential allosteric ligands. The structures were derived by homology modeling based on the template of E. coli and B. stearothermophilus. PYK models and ligands are provided as .pdb files and can be displayed by using the program PyMOL, for instance.
Creators: Nadine Veith, Anna Feldman-Salit, Stefan Henrich, Rebecca Wade
Submitter: Nadine Veith
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Abstract (Expand)
Authors: N. Veith, M. Solheim, K. W. van Grinsven, B. G. Olivier, J. Levering, R. Grosseholz, J. Hugenholtz, H. Holo, I. Nes, B. Teusink, U. Kummer
Date Published: 19th Dec 2014
Publication Type: Not specified
PubMed ID: 25527553
Citation: Appl Environ Microbiol. 2015 Mar 1;81(5):1622-33. doi: 10.1128/AEM.03279-14. Epub 2014 Dec 19.
Abstract
Editor:
Date Published: 25th Jul 2013
Publication Type: Not specified
DOI: 10.1371/journal.pcbi.1003159
Citation:
Poster presented at the 12th International Conference on Systems Biology (ICSB), Heidelberg/Mannheim, August 28 - September 1, 2011.
Creators: Stefan Henrich, Rebecca Wade, Anna Feldman-Salit, Nadine Veith
Submitter: Stefan Henrich