Amino acid metabolism of four LAB species: Streptococcus pyogenes, Lactococcus lactis, Enterococcus faecalis and Lactobacillus plantarum.
- Order Studies
Basically extending SYSMO-LAB 1st phase into second with addition of fourth species, Lb. plantarum. The main focus is amino acid metabolism. primary metabolisms, like glycolysis is also interest.
SEEK ID: https://fairdomhub.org/investigations/29
Projects: SysMO-LAB
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Created: 19th May 2011 at 13:26
Last updated: 12th May 2016 at 15:55
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Projects: SysMO-LAB
Institutions: University of Rostock
Expertise: Microbiology, Genetics, Molecular Biology, Transcriptomics, Streptococcus pyogenes, Lactococcus, Molecular microbiology, Genetic regulation
Tools: Microbiology, Genetics, Molecular Biology, Genetic modification, Transcriptomics, Microarray analysis, Molecular biology techniques (RNA/DNA/Protein)
SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".
The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.
Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...
Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep
Web page: http://sysmo.net/
Comparative Systems Biology: Lactic Acid Bacteria
Programme: SysMO
Public web page: http://www.sysmo.net/index.php?index=57
Determination of essential amino acids for Streptococcus pyogenes M49
Submitter: Araz Zeyniyev
Investigation: Amino acid metabolism of four LAB species: Stre...
Assays: Construction of in vivo-like buffer for S. pyogenes, Determination of essential amino acids for Streptococcus pyogenes
Snapshots: No snapshots
Lactic acid bacteria generally use homolactic fermentation for generation of ATP. Here we studied the role of Arginine and Glutamine metabolism on the general physiology of the lactic acid bacteria Streptococcus pyogenes. A deletion mutant of glnA (glutamine synthetase) has been constructed in the S. pyogenes M49 591 background. The glnA mutant strain shows decreased growth in low glutamine and excess glutamate conditions and no growth at all in low glutamine and low glutamate conditions. An arcA ...
Submitter: Antje Sieg
Investigation: Amino acid metabolism of four LAB species: Stre...
Assays: Characterization of flux distribution of S. pyogenes M9 wild type and th...
Snapshots: No snapshots
Determination of essential amino acids for Streptococcus pyogenes
Submitter: Araz Zeyniyev
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Amino acid metabolism of four LAB species: Stre...
Organisms: Streptococcus pyogenes : M49 (591) (wild-type / wild-type)
SOPs: No SOPs
Data files: amino acid auxotrophy for streptococcus pyogenes
Snapshots: No snapshots
S. pyogenes wildetype, an arcA- and a glnA-deletion mutants were grown in CDM-LAB cultures at pH 6.5 and 7.5 and at a growth rate of 0.05
Submitter: Antje Sieg
Assay type: Experimental Assay Type
Technology type: HPLC
Investigation: Amino acid metabolism of four LAB species: Stre...
Organisms: Streptococcus pyogenes : M49 (591) (wild-type / wild-type)
SOPs: Analysis of organic acid by HPLC, SOP 2.1 Method for synthesis of LAB-medium used...
Data files: Characterization of chemostats from S. pyogenes...
Snapshots: No snapshots
In order to construct an in vivo-like buffer for S. pyogenes, the intracellular concentrations of Fe, K, Mg, Mn Na, P and S elements were determined via ICP-AES (inductively coupled plasma atomic emissionspectroscopy) method at the Institute of Land Use, University of Rostock. The samples for the analysis were obtained from a steady state culture grown on CDM-LAB with glucose.
Submitter: Araz Zeyniyev
Assay type: Metabolite Profiling
Technology type: Inductively Coupled Plasma Mass Spectrometry
Investigation: Amino acid metabolism of four LAB species: Stre...
Organisms: Streptococcus pyogenes : M49 (591) (wild-type / wild-type)
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
amino acid auxotrophy for streptococcus pyogenes in CDM-IMIKRO (not CDM-LAB) as function of final growth yield (OD600 at stationary phase) in 96well plates (200 ul culture)
Creator: Araz Zeyniyev
Submitter: Araz Zeyniyev
S. pyogenes was grown in C-limited cultures at pH 6.5 and 7.5 and at a growth rate of 0.05 The glnA mutant strain shows decreased growth in low glutamine and excess glutamate conditions and no growth at all in low glutamine and low glutamate conditions. Preliminary results of glucose-limited chemostat cultures indicate a reversion of the pH dependency of the shift from homolactic to more mixed acid fermentation: wild type - lactate/formate ratio at pH 6.5 = 11.8, at pH 7.5 = 2.8 glnA mutant - ...
Creators: Antje Sieg, Silvio Hering, Martijn Bekker
Submitter: Antje Sieg
This HPLC method uses a isocratic method and a RI detector to identify and quantify almost all excreted catabolic metabolites.
Creator: Martijn Bekker
Submitter: Martijn Bekker
Investigations: Amino acid metabolism of four LAB species: Stre..., Investigation of glycolysis and pyruvate branch...
Studies: Arginine and Glutamine metabolism in S. pyogenes, Comparative modeling and phosphate dependence f...
Assays: Characterization of flux distribution of S. pyo..., Glucose pulsed S. pyogenes
Creator: Martijn Bekker
Submitter: The JERM Harvester
Investigations: Amino acid metabolism of four LAB species: Stre..., Investigation of glycolysis and pyruvate branch...
Studies: Arginine and Glutamine metabolism in S. pyogenes, Comparative modeling and phosphate dependence f...
Assays: Characterization of flux distribution of S. pyo..., Glucose pulsed L. lactis