SOPs

What is a SOP?

417 SOPs visible to you, out of a total of 708

LEI-MIHCSME Template guidlines

NL-Bioimaging FAIR Metadata Templates

An overview of MIHCSME template components.

Creator: Rohola Hosseini

Submitter: Rohola Hosseini

Investigations: Minimal Information for High Content Screening ...

Studies: MIHCSME templates

Assays: General MIHCSME template

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Created: 8th Feb 2023 at 11:14, Last updated: 21st Apr 2023 at 13:44

Extending Eulerian Parameter Inference to Single Cell Data code

Working Group Nicole Radde

There are three files:

executable.py
functions.py
plots.py

The first file leads you through my data creation and processing step by step. You can choose how many of my data you want to use or reproduce by yourself.

The executable-file needs the functions from "functions" and "plots" in order to run correctly.

Creator: Aaron Laier

Submitter: Aaron Laier

Investigations: 1 hidden item

Studies: Extending Eulerian Parameter Inference to Singl...

Assays: Final Report

Created: 12th Apr 2023 at 18:28

P.BOO-230324-V1_KC_Protocol

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 21:38, Last updated: 30th Mar 2023 at 22:45

P.BOO-230324-V1_2016_Nov_04_Bronchoscopy_Protocol_vers1.0

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 21:35, Last updated: 30th Mar 2023 at 22:45

P.BOO-230324-V1_2018_June_Bronchoscopy_Protocol_vers2.0

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 21:37, Last updated: 30th Mar 2023 at 22:45

P.BOO-230324-V1_2019_April_Bronchoscopy_Protocol_vers4.0

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 21:37, Last updated: 30th Mar 2023 at 22:45

P.BOO-230324-V1_2020_Jan_Bronchoscopy_Protocol_vers4.0

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 21:38, Last updated: 30th Mar 2023 at 22:45

P.SWA-230302-V1_Jeol-Accu-ToF_05252022

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Interaction of N-Nitroamines with Bincuelar Cop...

Assays: High Resolution Mass Spectra - Data Linked

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Created: 16th Mar 2023 at 17:16, Last updated: 16th Mar 2023 at 17:24

P.SWA-230223-V1_synthesis-protocol

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Interaction of N-Nitroamines with Bincuelar Cop...

Assays: Chemical Synthesis - Metadata

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Created: 16th Mar 2023 at 17:13, Last updated: 16th Mar 2023 at 17:23

P.SWA-230302-V1_Fluorescence-and-XPS

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Interaction of N-Nitroamines with Bincuelar Cop...

Assays: Absorption and Emission Spectroscopy - Data Linked, X-ray Photoelectron Spectroscopy - Data Linked

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Created: 16th Mar 2023 at 17:14, Last updated: 16th Mar 2023 at 17:23

P.SWA-230302-V1_Mass-Spectrometry

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Interaction of N-Nitroamines with Bincuelar Cop...

Assays: High Resolution Mass Spectra - Data Linked

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Created: 16th Mar 2023 at 17:15, Last updated: 16th Mar 2023 at 17:23

P.SWA-230302-V1_NMR

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Interaction of N-Nitroamines with Bincuelar Cop...

Assays: Nuclear Magnetic Resonance Spectroscopy - Data ...

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Created: 16th Mar 2023 at 17:17, Last updated: 16th Mar 2023 at 17:23

P.ESS-201123-V1_gpt-NextGen-Protocol-.pdf

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: GPT Assay - Data Attached

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Created: 8th Mar 2023 at 19:27, Last updated: 8th Mar 2023 at 22:52

P.ESS-230303-V1_Data-processing-(alignment).docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Genome Alignment - Data Linked, Mutational Spectral Analysis - Data Attached

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Created: 8th Mar 2023 at 19:32, Last updated: 8th Mar 2023 at 22:52

P.ESS-230303-V2_Cell-culture.docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:28, Last updated: 8th Mar 2023 at 22:52

P.ESS-230308-V2_Duplex-sequencing.docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Illumina Sequencing - Data Linked

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Created: 8th Mar 2023 at 19:30, Last updated: 8th Mar 2023 at 22:52

P.ENG-200831-V1_NDMA-Juvenile-Mouse-Injection-Protocol.pdf

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:35, Last updated: 8th Mar 2023 at 22:52

P.ENG-200806-V2_Short-Term-Collection-at-Necropsy.pdf

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:35, Last updated: 8th Mar 2023 at 22:52

P.ENG-220105-V1_NDMA-Juvenile-Mouse-Single-Injection-Protocol.docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:36, Last updated: 8th Mar 2023 at 22:52

P.ENG-220105-V1_Tissue-Collection-at-Necropsy-(2021).docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:37, Last updated: 8th Mar 2023 at 22:52

Protocols file

NL-Bioimaging FAIR Metadata Templates

This file is associated with performed study and describes protocols used.

Creator: Rohola Hosseini

Submitter: Rohola Hosseini

Investigations: Minimal Information for High Content Screening ...

Studies: MIHCSME templates

Assays: MIHCSME template example for “Temporal single c...

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Created: 3rd Feb 2023 at 11:57, Last updated: 3rd Feb 2023 at 14:02

SOP Library file

NL-Bioimaging FAIR Metadata Templates

Associated library SOP file with metadata template.

Creator: Rohola Hosseini

Submitter: Rohola Hosseini

Investigations: Minimal Information for High Content Screening ...

Studies: MIHCSME templates

Assays: MIHCSME template example for compound screen on...

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Created: 3rd Feb 2023 at 12:07, Last updated: 3rd Feb 2023 at 14:02

test licence

Perennial ryegrass

No description specified

Creator: Flora D'Anna

Submitter: Flora D'Anna

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

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Created: 3rd Aug 2021 at 14:32, Last updated: 23rd Jan 2023 at 15:27

P.HEM-220913-V2_20210610_fieldworkOperatingProc.docx

MIT SRP

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: MIT SRP

Studies: Benthic fluxes of fluorescent dissolved organic...

Assays: Field Water Sensor Run

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Created: 11th Oct 2022 at 13:57, Last updated: 17th Oct 2022 at 19:23

P.HEM-220913-V2_20210520_fieldworkOperatingProc.docx

MIT SRP

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: MIT SRP

Studies: Benthic fluxes of fluorescent dissolved organic...

Assays: Field Water Sensor Run

Download

Created: 11th Oct 2022 at 13:56, Last updated: 17th Oct 2022 at 19:23

P.HEM-220913-V2_20210513_fieldworkOperatingProc.docx

MIT SRP

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: MIT SRP

Studies: Benthic fluxes of fluorescent dissolved organic...

Assays: Field Water Sensor Run

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Created: 11th Oct 2022 at 13:55, Last updated: 17th Oct 2022 at 19:23

P.FLY-220824-V1_P---Immunohistochemistry-Analysis.docx

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: Multimodal profiling of lung granulomas in maca...

Assays: Immunohistochemistry – Data Linked

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Created: 17th Oct 2022 at 19:00

P.SHA-220824-V1_P---Clustering.docx

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: Multimodal profiling of lung granulomas in maca...

Assays: Single Cell Clustering Analysis – Data Linked

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Created: 17th Oct 2022 at 18:58

P.SHA-220912-V1_Drop-seq_Alignment_Cookbook.pdf

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: CD4+ T cells re-wire granuloma cellularity and ..., CD8+ lymphocytes are critical for early control..., High-dose intravenous BCG vaccination induces e..., Multimodal profiling of lung granulomas in maca...

Assays: Single Cell Expression Analysis - Data Linked, Single Cell Expression Analysis - Data Linked, Single Cell Expression Analysis - Data Linked, Single Cell Expression Matrix Analysis – Data L...

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Created: 17th Oct 2022 at 18:56

P.SHA-220819-V1_SeqWellHughes.et.al.Master.Protocol.pdf

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Assays: DNA Extraction - Metadata, Library Creation - Metadata, Library Creation – Metadata, Library Prep - Metadata, Short Read Sequencing - Data Linked, Short Read Sequencing - Data Linked, Single Cell Sequencing – Data Linked

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Created: 17th Oct 2022 at 18:38

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