SOPs

What is a SOP?

431 SOPs visible to you, out of a total of 730

Parameter Search SOP

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

No description specified

Creators: Christoff Odendaal, Barbara Bakker

Submitter: Christoff Odendaal

Investigations: Mitochondrial fatty acid oxidation in human liver

Studies: Model construction

Assays: Kinetics Minireviews, Models

Download

Created: 28th Feb 2023 at 15:34, Last updated: 13th Jun 2023 at 14:53

P.SES-230405-V1_JP_Flow_Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Specific CD4+ T cell phenotypes associate with ...

Assays: Flow Cytometry - Data Linked

Download

Created: 17th May 2023 at 20:44, Last updated: 17th May 2023 at 20:47

P.BOO-230324-V1_KC_Protocol

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Specific CD4+ T cell phenotypes associate with ...

Assays: Patient Visit - Metadata, Tissue Collection - Metadata

Download

Created: 17th May 2023 at 20:46, Last updated: 17th May 2023 at 20:47

P.KAM-230131-V1_cancer-cell-perfusion-and-extravasation-analysis.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Impact of fibrinogen, fibrin thrombi and thromb...

Assays: Cancer Cell Extravasation Analysis - Data Linked

Download

Created: 16th May 2023 at 18:15, Last updated: 16th May 2023 at 18:27

P.KAM-230131-V1_clot-generate-and-image-analysis.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Impact of fibrinogen, fibrin thrombi and thromb...

Assays: Clot Modeling Analysis - Data Linked

Download

Created: 16th May 2023 at 18:17, Last updated: 16th May 2023 at 18:27

P.KAM-230131-V1_OOC-protocol-device-and-network-creation.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Impact of fibrinogen, fibrin thrombi and thromb...

Assays: Microfluidic Device Creation - Metadata

Download

Created: 16th May 2023 at 18:11, Last updated: 16th May 2023 at 18:25

P.KAM-230131-V1_Confocal-imaging.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Impact of fibrinogen, fibrin thrombi and thromb...

Assays: Device Imaging - Data Linked, Permeability Analysis - Data Linked

Download

Created: 16th May 2023 at 18:14, Last updated: 16th May 2023 at 18:25

P.KAM-230131-V1_Flow.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Impact of fibrinogen, fibrin thrombi and thromb...

Assays: Flow Cytometry - Data Linked, Flow Cytometry Analysis - Data Linked

Download

Created: 16th May 2023 at 18:18, Last updated: 16th May 2023 at 18:25

P.KAM-230131-V1_Cell-culture.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Impact of fibrinogen, fibrin thrombi and thromb..., Patient-specific vascularized tumor model: Bloc..., Personalized Vascularized Models of Breast Canc..., Polyploidy of MDA-MB-231 cells drives increased..., Remodeling of self-assembled microvascular netw..., Utilizing convolutional neural networks for dis...

Assays: Cell Culture - Metadata, Cell Culture and Tumor Spheroid Creation - Meta..., Cell Culture and Tumor Spheroid Creation - Meta..., Microfluidic Device Creation - Metadata, Microfluidic Network Formation - Metadata, Tumoroid Formation - Metadata

Download

Created: 16th May 2023 at 18:10, Last updated: 16th May 2023 at 18:25

SOP for human genomic DNA extraction

MESI-STRAT

Standard Operating Procedure for human genomic DNA extraction ( copied from GEO DataSets GSM1375121)

Creators: Olga Krebs, Christiane Opitz

Submitter: Olga Krebs

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

Download

Created: 19th Mar 2018 at 11:25, Last updated: 15th May 2023 at 12:58

SOP Induced fit docking

NMTrypI - New Medicines for Trypanosomatidic Infections

SOP describing application of the Induced fit docking workflow to Trypanosoma and Leishmania alpha-tubulin receptors.

Creators: Ina Poehner, Rebecca Wade

Submitter: Ina Poehner

Investigations: Antiparasitic dinitroaniline-ether phospholipid...

Studies: Docking studies of trifluraline and the dinitro...

Assays: Induced-fit docking studies

Download

Created: 21st Apr 2023 at 08:33, Last updated: 24th Apr 2023 at 13:36

SOP PIPSA

NMTrypI - New Medicines for Trypanosomatidic Infections

General SOP for the webPIPSA workflow to study electrostatic potential differences of full alpha-tubulin homology models and various putative binding site regions

Creators: Ina Poehner, Rebecca Wade

Submitter: Ina Poehner

Investigations: Antiparasitic dinitroaniline-ether phospholipid...

Studies: Computational identification of potential dinit...

Assays: Comparative electrostatic analysis of dinitroan...

Download

Created: 21st Feb 2023 at 11:43, Last updated: 24th Apr 2023 at 13:34

SOP Homology modeling of alpha-tubulins

NMTrypI - New Medicines for Trypanosomatidic Infections

General SOP for alpha-tubulin homology model building

Creators: Ina Poehner, Rebecca Wade

Submitter: Ina Poehner

Investigations: Antiparasitic dinitroaniline-ether phospholipid...

Studies: Computational identification of potential dinit...

Assays: Comparative electrostatic analysis of dinitroan...

Download

Created: 22nd Feb 2023 at 10:23, Last updated: 24th Apr 2023 at 13:34

SOP tubulin protein preparation

NMTrypI - New Medicines for Trypanosomatidic Infections

SOP for protein preparation steps performed for alpha-tubulin homology models (hydrogen addition, hydrogen bonding network optimization and energy minimization)

Creators: Ina Poehner, Rebecca Wade

Submitter: Ina Poehner

Investigations: Antiparasitic dinitroaniline-ether phospholipid...

Studies: Computational identification of potential dinit...

Assays: Comparative electrostatic analysis of dinitroan...

Download

Created: 22nd Feb 2023 at 10:26, Last updated: 24th Apr 2023 at 13:34

LEI-MIHCSME Template guidlines

NL-Bioimaging FAIR Metadata Templates

An overview of MIHCSME template components.

Creator: Rohola Hosseini

Submitter: Rohola Hosseini

Investigations: Minimal Information for High Content Screening ...

Studies: MIHCSME templates

Assays: General MIHCSME template

Download

Created: 8th Feb 2023 at 11:14, Last updated: 21st Apr 2023 at 13:44

Extending Eulerian Parameter Inference to Single Cell Data code

Working Group Nicole Radde

There are three files:

executable.py
functions.py
plots.py

The first file leads you through my data creation and processing step by step. You can choose how many of my data you want to use or reproduce by yourself.

The executable-file needs the functions from "functions" and "plots" in order to run correctly.

Creator: Aaron Laier

Submitter: Aaron Laier

Investigations: 1 hidden item

Studies: Extending Eulerian Parameter Inference to Singl...

Assays: Final Report

Created: 12th Apr 2023 at 18:28

P.BOO-230324-V1_KC_Protocol

Hi-IMPAcTB