SOPs

401 SOPs visible to you, out of a total of 692

P.ENG-200831-V1_NDMA-Juvenile-Mouse-Injection-Protocol.pdf

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:35, Last updated: 8th Mar 2023 at 22:52

P.ENG-200806-V2_Short-Term-Collection-at-Necropsy.pdf

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:35, Last updated: 8th Mar 2023 at 22:52

P.ENG-220105-V1_NDMA-Juvenile-Mouse-Single-Injection-Protocol.docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:36, Last updated: 8th Mar 2023 at 22:52

P.ENG-220105-V1_Tissue-Collection-at-Necropsy-(2021).docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:37, Last updated: 8th Mar 2023 at 22:52

NL-Bioimaging FAIR Metadata Templates

This file is associated with performed study and describes protocols used.

Creator: Rohola Hosseini

Submitter: Rohola Hosseini

Investigations: Minimal Information for High Content Screening ...

Studies: MIHCSME templates

Assays: MIHCSME template example for “Temporal single c...

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Created: 3rd Feb 2023 at 11:57, Last updated: 3rd Feb 2023 at 14:02

SOP Library file

NL-Bioimaging FAIR Metadata Templates

Associated library SOP file with metadata template.

Creator: Rohola Hosseini

Submitter: Rohola Hosseini

Investigations: Minimal Information for High Content Screening ...

Studies: MIHCSME templates

Assays: MIHCSME template example for compound screen on...

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Created: 3rd Feb 2023 at 12:07, Last updated: 3rd Feb 2023 at 14:02

Perennial ryegrass

No description specified

Creator: Flora D'Anna

Submitter: Flora D'Anna

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

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Created: 3rd Aug 2021 at 14:32, Last updated: 23rd Jan 2023 at 15:27

P.HEM-220913-V2_20210610_fieldworkOperatingProc.docx

MIT SRP

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: MIT SRP

Studies: Benthic fluxes of fluorescent dissolved organic...

Assays: Field Water Sensor Run

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Created: 11th Oct 2022 at 13:57, Last updated: 17th Oct 2022 at 19:23

P.HEM-220913-V2_20210520_fieldworkOperatingProc.docx

MIT SRP

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: MIT SRP

Studies: Benthic fluxes of fluorescent dissolved organic...

Assays: Field Water Sensor Run

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Created: 11th Oct 2022 at 13:56, Last updated: 17th Oct 2022 at 19:23

P.HEM-220913-V2_20210513_fieldworkOperatingProc.docx

MIT SRP

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: MIT SRP

Studies: Benthic fluxes of fluorescent dissolved organic...

Assays: Field Water Sensor Run

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Created: 11th Oct 2022 at 13:55, Last updated: 17th Oct 2022 at 19:23

P.FLY-220824-V1_P---Immunohistochemistry-Analysis.docx

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: Multimodal profiling of lung granulomas in maca...

Assays: Immunohistochemistry – Data Linked

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Created: 17th Oct 2022 at 19:00

P.SHA-220824-V1_P---Clustering.docx

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: Multimodal profiling of lung granulomas in maca...

Assays: Single Cell Clustering Analysis – Data Linked

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Created: 17th Oct 2022 at 18:58

P.SHA-220912-V1_Drop-seq_Alignment_Cookbook.pdf

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: CD4+ T cells re-wire granuloma cellularity and ..., CD8+ lymphocytes are critical for early control..., High-dose intravenous BCG vaccination induces e..., Multimodal profiling of lung granulomas in maca...

Assays: Single Cell Expression Analysis - Data Linked, Single Cell Expression Analysis - Data Linked, Single Cell Expression Analysis - Data Linked, Single Cell Expression Matrix Analysis – Data L...

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Created: 17th Oct 2022 at 18:56

P.SHA-220819-V1_SeqWellHughes.et.al.Master.Protocol.pdf

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: CD4+ T cells re-wire granuloma cellularity and ..., CD8+ lymphocytes are critical for early control..., High-dose intravenous BCG vaccination induces e..., Multimodal profiling of lung granulomas in maca...

Assays: DNA Extraction - Metadata, Library Creation - Metadata, Library Creation – Metadata, Library Prep - Metadata, Short Read Sequencing - Data Linked, Short Read Sequencing - Data Linked, Single Cell Sequencing – Data Linked

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Created: 17th Oct 2022 at 18:38

P.FLY-210708-V1_Hannah's-GentleMacs-Protocol-as-of-Sept-18.docx

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: CD4+ T cells re-wire granuloma cellularity and ..., CD8+ lymphocytes are critical for early control..., Multimodal profiling of lung granulomas in maca...

Assays: Library Creation – Metadata, Tissue Collection - Metadata, Tissue Collection - Metadata

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Created: 17th Oct 2022 at 18:37

SOP - Data evaluation of non-volatile, small, polar metabolites

EbN1 Systems Biology

No description specified

Creators: Sarah Kirstein, Katrin Ripken

Submitter: Sarah Kirstein

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: non-volatile metabolites GC/MS

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Created: 30th Apr 2022 at 14:55, Last updated: 13th Oct 2022 at 07:29

SOP – Protein preparation, nanoLC-MS/MS analyses of peptides and protein identification

EbN1 Systems Biology

No description specified

Creator: Lars Wöhlbrand

Submitter: Lars Wöhlbrand

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: Proteomic data

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Created: 3rd Jun 2022 at 09:31, Last updated: 13th Oct 2022 at 07:29

SOP_extraction_CoA-esters

EbN1 Systems Biology

No description specified

Creators: Sarah Kirstein, Katrin Ripken, Esther Wenzel

Submitter: Sarah Kirstein

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: CoA LC/MS Data

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Created: 27th Apr 2022 at 09:48, Last updated: 13th Oct 2022 at 07:29

SOP_analysis_CoA-esters

EbN1 Systems Biology

No description specified

Creators: Katrin Ripken, Esther Wenzel, Sarah Kirstein

Submitter: Sarah Kirstein

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: CoA LC/MS Data

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Created: 27th Apr 2022 at 09:57, Last updated: 13th Oct 2022 at 07:29

SOP_data_evalutation_CoA-esters

EbN1 Systems Biology

No description specified

Creators: Katrin Ripken, Sarah Kirstein

Submitter: Sarah Kirstein

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: CoA LC/MS Data

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Created: 27th Apr 2022 at 10:15, Last updated: 13th Oct 2022 at 07:29

SOP - Extraction of non-volatile, small, polar metabolites for GC-MS analysis

EbN1 Systems Biology

No description specified

Creators: Katrin Ripken, Esther Wenzel, Sarah Kirstein

Submitter: Sarah Kirstein

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: non-volatile metabolites GC/MS

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Created: 30th Apr 2022 at 14:41, Last updated: 13th Oct 2022 at 07:29

SOP - Analysis of non-volatile, small, polar metabolites via GC-MS

EbN1 Systems Biology

No description specified

Creators: Katrin Ripken, Sarah Kirstein

Submitter: Sarah Kirstein

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: non-volatile metabolites GC/MS

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Created: 30th Apr 2022 at 14:49, Last updated: 13th Oct 2022 at 07:29

P.FLY-220823-V1_P---Chromosomal-Equivalents.rtf

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: Multimodal profiling of lung granulomas in maca...

Assays: NHP Necropsy – Metadata

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Created: 11th Oct 2022 at 19:41

P.FLY-220823-V1_P---Bacteria-Burden.docx

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: Multimodal profiling of lung granulomas in maca...

Assays: NHP Necropsy – Metadata

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Created: 11th Oct 2022 at 19:41

P.FLY-220823-V1_P---PET_CT_Imaging.docx

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: Intravenous BCG-mediated protection against tub..., Multimodal profiling of lung granulomas in maca...

Assays: PET-CT Scan - Data Linked, PET-CT Scan Analysis – Data Linked, PET-CT Scan – Data Linked, Patient Visit – Metadata

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Created: 11th Oct 2022 at 19:19

P.FLY-220823-V1_P---Necropsy.docx

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: Multimodal profiling of lung granulomas in maca...

Assays: NHP Necropsy – Metadata, Patient Visit – Metadata

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Created: 11th Oct 2022 at 19:18

P.FLY-220823-V1_P---Mtb-Infection.rtf

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: Multimodal profiling of lung granulomas in maca...

Assays: Patient Visit – Metadata

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Created: 11th Oct 2022 at 19:16

P.FLY-220823-V1_P---NHP_housing.docx

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control..., Humoral correlates of protection against Mycoba..., Multimodal profiling of lung granulomas in maca...

Assays: Patient Visit - Metadata, Patient Visit - Metadata, Patient Visit – Metadata

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Created: 27th Sep 2022 at 14:53, Last updated: 28th Sep 2022 at 15:18

Example SOP for AMINOALLYL LABELING OF RNA FOR MICROARRAYS

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

Standard Operating Procedure describes the labeling of eukaryotic RNA with aminoallyl labeled nucleotides via first strand cDNA synthesis followed by a coupling of the aminoallyl groups to either Cyanine 3 or 5 (Cy 3/Cy5) fluorescent molecules (published by The Institute For Genomic Research

Creators: Olga Krebs, Jeremy Hasseman , Emily Chen, Ivana Yang

Submitter: Olga Krebs

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 26th Nov 2019 at 07:11, Last updated: 17th Aug 2022 at 10:45

SOP – Substrate adaptation, cultivation and harvesting for multi-OMICS analysis

EbN1 Systems Biology

No description specified

Creators: Daniel Wünsch, Patrick Becker

Submitter: Daniel Wünsch

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: Cultivation for multi-OMICS

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Created: 5th May 2022 at 14:09

(v.1.16.1)

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