SOPs

What is a SOP?

348 SOPs visible to you, out of a total of 626

P.SWA-230302-V1_Fluorescence-and-XPS

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Interaction of N-Nitroamines with Bincuelar Cop...

Assays: Absorption and Emission Spectroscopy - Data Linked, X-ray Photoelectron Spectroscopy - Data Linked

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Created: 16th Mar 2023 at 17:14, Last updated: 16th Mar 2023 at 17:23

P.SWA-230302-V1_Mass-Spectrometry

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Interaction of N-Nitroamines with Bincuelar Cop...

Assays: High Resolution Mass Spectra - Data Linked

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Created: 16th Mar 2023 at 17:15, Last updated: 16th Mar 2023 at 17:23

P.SWA-230302-V1_NMR

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Interaction of N-Nitroamines with Bincuelar Cop...

Assays: Nuclear Magnetic Resonance Spectroscopy - Data ...

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Created: 16th Mar 2023 at 17:17, Last updated: 16th Mar 2023 at 17:23

P.ESS-201123-V1_gpt-NextGen-Protocol-.pdf

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: GPT Assay - Data Attached

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Created: 8th Mar 2023 at 19:27, Last updated: 8th Mar 2023 at 22:52

P.ESS-230303-V1_Data-processing-(alignment).docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Genome Alignment - Data Linked, Mutational Spectral Analysis - Data Attached

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Created: 8th Mar 2023 at 19:32, Last updated: 8th Mar 2023 at 22:52

P.ESS-230303-V2_Cell-culture.docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:28, Last updated: 8th Mar 2023 at 22:52

P.ESS-230308-V2_Duplex-sequencing.docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Illumina Sequencing - Data Linked

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Created: 8th Mar 2023 at 19:30, Last updated: 8th Mar 2023 at 22:52

P.ENG-200831-V1_NDMA-Juvenile-Mouse-Injection-Protocol.pdf

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:35, Last updated: 8th Mar 2023 at 22:52

P.ENG-200806-V2_Short-Term-Collection-at-Necropsy.pdf

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:35, Last updated: 8th Mar 2023 at 22:52

P.ENG-220105-V1_NDMA-Juvenile-Mouse-Single-Injection-Protocol.docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:36, Last updated: 8th Mar 2023 at 22:52

P.ENG-220105-V1_Tissue-Collection-at-Necropsy-(2021).docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:37, Last updated: 8th Mar 2023 at 22:52

Protocols file

NL-Bioimaging FAIR Metadata Templates

This file is associated with performed study and describes protocols used.

Creator: Rohola Hosseini

Submitter: Rohola Hosseini

Investigations: Minimal Information for High Content Screening ...

Studies: MIHCSME templates

Assays: MIHCSME template example for “Temporal single c...

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Created: 3rd Feb 2023 at 11:57, Last updated: 3rd Feb 2023 at 14:02

SOP Library file

NL-Bioimaging FAIR Metadata Templates

Associated library SOP file with metadata template.

Creator: Rohola Hosseini

Submitter: Rohola Hosseini

Investigations: Minimal Information for High Content Screening ...

Studies: MIHCSME templates

Assays: MIHCSME template example for compound screen on...

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Created: 3rd Feb 2023 at 12:07, Last updated: 3rd Feb 2023 at 14:02

test licence

Perennial ryegrass

No description specified

Creator: Flora D'Anna

Submitter: Flora D'Anna

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

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Created: 3rd Aug 2021 at 14:32, Last updated: 23rd Jan 2023 at 15:27

P.HEM-220913-V2_20210610_fieldworkOperatingProc.docx

MIT SRP

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: MIT SRP

Studies: Benthic fluxes of fluorescent dissolved organic...

Assays: Field Water Sensor Run

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Created: 11th Oct 2022 at 13:57, Last updated: 17th Oct 2022 at 19:23

P.HEM-220913-V2_20210520_fieldworkOperatingProc.docx

MIT SRP

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: MIT SRP

Studies: Benthic fluxes of fluorescent dissolved organic...

Assays: Field Water Sensor Run

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Created: 11th Oct 2022 at 13:56, Last updated: 17th Oct 2022 at 19:23

P.HEM-220913-V2_20210513_fieldworkOperatingProc.docx

MIT SRP

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: MIT SRP

Studies: Benthic fluxes of fluorescent dissolved organic...

Assays: Field Water Sensor Run

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Created: 11th Oct 2022 at 13:55, Last updated: 17th Oct 2022 at 19:23

P.FLY-220824-V1_P---Immunohistochemistry-Analysis.docx

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: Multimodal profiling of lung granulomas in maca...

Assays: Immunohistochemistry – Data Linked

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Created: 17th Oct 2022 at 19:00

P.SHA-220824-V1_P---Clustering.docx

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: Multimodal profiling of lung granulomas in maca...

Assays: Single Cell Clustering Analysis – Data Linked

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Created: 17th Oct 2022 at 18:58

P.SHA-220912-V1_Drop-seq_Alignment_Cookbook.pdf

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: CD4+ T cells are homeostasis regulators during ..., CD8+ lymphocytes are critical for early control..., Multimodal profiling of lung granulomas in maca...

Assays: Single Cell Expression Analysis - Data Linked, Single Cell Expression Analysis - Data Linked, Single Cell Expression Matrix Analysis – Data L...

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Created: 17th Oct 2022 at 18:56

P.SHA-220819-V1_SeqWellHughes.et.al.Master.Protocol.pdf

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: CD4+ T cells are homeostasis regulators during ..., CD8+ lymphocytes are critical for early control..., Multimodal profiling of lung granulomas in maca...

Assays: DNA Extraction - Metadata, Library Creation – Metadata, Library Prep - Metadata, Short Read Sequencing - Data Linked, Single Cell Sequencing – Data Linked

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Created: 17th Oct 2022 at 18:38

P.FLY-210708-V1_Hannah's-GentleMacs-Protocol-as-of-Sept-18.docx

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: CD4+ T cells are homeostasis regulators during ..., CD8+ lymphocytes are critical for early control..., Multimodal profiling of lung granulomas in maca...

Assays: Library Creation – Metadata, Tissue Collection - Metadata, Tissue Collection - Metadata

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Created: 17th Oct 2022 at 18:37

SOP - Data evaluation of non-volatile, small, polar metabolites

EbN1 Systems Biology

No description specified

Creators: Sarah Kirstein, Katrin Ripken

Submitter: Sarah Kirstein

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: non-volatile metabolites GC/MS

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Created: 30th Apr 2022 at 14:55, Last updated: 13th Oct 2022 at 07:29

SOP – Protein preparation, nanoLC-MS/MS analyses of peptides and protein identification

EbN1 Systems Biology

No description specified

Creator: Lars Wöhlbrand

Submitter: Lars Wöhlbrand

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: Proteomic data

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Created: 3rd Jun 2022 at 09:31, Last updated: 13th Oct 2022 at 07:29

SOP_extraction_CoA-esters

EbN1 Systems Biology

No description specified

Creators: Sarah Kirstein, Katrin Ripken, Esther Wenzel

Submitter: Sarah Kirstein

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: CoA LC/MS Data

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Created: 27th Apr 2022 at 09:48, Last updated: 13th Oct 2022 at 07:29

SOP_analysis_CoA-esters

EbN1 Systems Biology

No description specified

Creators: Katrin Ripken, Esther Wenzel, Sarah Kirstein

Submitter: Sarah Kirstein

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: CoA LC/MS Data

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Created: 27th Apr 2022 at 09:57, Last updated: 13th Oct 2022 at 07:29

SOP_data_evalutation_CoA-esters

EbN1 Systems Biology

No description specified

Creators: Katrin Ripken, Sarah Kirstein

Submitter: Sarah Kirstein

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: CoA LC/MS Data

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Created: 27th Apr 2022 at 10:15, Last updated: 13th Oct 2022 at 07:29

SOP - Extraction of non-volatile, small, polar metabolites for GC-MS analysis

EbN1 Systems Biology

No description specified

Creators: Katrin Ripken, Esther Wenzel, Sarah Kirstein

Submitter: Sarah Kirstein

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: non-volatile metabolites GC/MS

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Created: 30th Apr 2022 at 14:41, Last updated: 13th Oct 2022 at 07:29

SOP - Analysis of non-volatile, small, polar metabolites via GC-MS

EbN1 Systems Biology

No description specified

Creators: Katrin Ripken, Sarah Kirstein

Submitter: Sarah Kirstein

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: non-volatile metabolites GC/MS

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Created: 30th Apr 2022 at 14:49, Last updated: 13th Oct 2022 at 07:29

P.FLY-220823-V1_P---Chromosomal-Equivalents.rtf

Hi-IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: Multimodal profiling of lung granulomas in maca...

Assays: NHP Necropsy – Metadata

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Created: 11th Oct 2022 at 19:41

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