SOPs

What is a SOP?

363 SOPs visible to you, out of a total of 670

P.KAM-230131-V1_Cell-culture.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Impact of fibrinogen, fibrin thrombi and thromb..., Personalized Vascularized Models of Breast Canc..., Utilizing convolutional neural networks for dis... and 2 hidden items

Assays: Cell Culture and Tumor Spheroid Creation - Meta..., Microfluidic Device Creation - Metadata, Tumoroid Formation - Metadata and 2 hidden items

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Created: 16th May 2023 at 18:10, Last updated: 16th May 2023 at 18:25

SOP for human genomic DNA extraction

MESI-STRAT

Standard Operating Procedure for human genomic DNA extraction ( copied from GEO DataSets GSM1375121)

Creators: Olga Krebs, Christiane Opitz

Submitter: Olga Krebs

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

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Created: 19th Mar 2018 at 11:25, Last updated: 15th May 2023 at 12:58

SOP Induced fit docking

NMTrypI - New Medicines for Trypanosomatidic Infections

SOP describing application of the Induced fit docking workflow to Trypanosoma and Leishmania alpha-tubulin receptors.

Creators: Ina Poehner, Rebecca Wade

Submitter: Ina Poehner

Investigations: Antiparasitic dinitroaniline-ether phospholipid...

Studies: Docking studies of trifluraline and the dinitro...

Assays: Induced-fit docking studies

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Created: 21st Apr 2023 at 08:33, Last updated: 24th Apr 2023 at 13:36

SOP PIPSA

NMTrypI - New Medicines for Trypanosomatidic Infections

General SOP for the webPIPSA workflow to study electrostatic potential differences of full alpha-tubulin homology models and various putative binding site regions

Creators: Ina Poehner, Rebecca Wade

Submitter: Ina Poehner

Investigations: Antiparasitic dinitroaniline-ether phospholipid...

Studies: Computational identification of potential dinit...

Assays: Comparative electrostatic analysis of dinitroan...

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Created: 21st Feb 2023 at 11:43, Last updated: 24th Apr 2023 at 13:34

SOP Homology modeling of alpha-tubulins

NMTrypI - New Medicines for Trypanosomatidic Infections

General SOP for alpha-tubulin homology model building

Creators: Ina Poehner, Rebecca Wade

Submitter: Ina Poehner

Investigations: Antiparasitic dinitroaniline-ether phospholipid...

Studies: Computational identification of potential dinit...

Assays: Comparative electrostatic analysis of dinitroan...

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Created: 22nd Feb 2023 at 10:23, Last updated: 24th Apr 2023 at 13:34

SOP tubulin protein preparation

NMTrypI - New Medicines for Trypanosomatidic Infections

SOP for protein preparation steps performed for alpha-tubulin homology models (hydrogen addition, hydrogen bonding network optimization and energy minimization)

Creators: Ina Poehner, Rebecca Wade

Submitter: Ina Poehner

Investigations: Antiparasitic dinitroaniline-ether phospholipid...

Studies: Computational identification of potential dinit...

Assays: Comparative electrostatic analysis of dinitroan...

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Created: 22nd Feb 2023 at 10:26, Last updated: 24th Apr 2023 at 13:34

LEI-MIHCSME Template guidlines

NL-Bioimaging FAIR Metadata Templates

An overview of MIHCSME template components.

Creator: Rohola Hosseini

Submitter: Rohola Hosseini

Investigations: Minimal Information for High Content Screening ...

Studies: MIHCSME templates

Assays: General MIHCSME template

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Created: 8th Feb 2023 at 11:14, Last updated: 21st Apr 2023 at 13:44

Extending Eulerian Parameter Inference to Single Cell Data code

Working Group Nicole Radde

There are three files:

executable.py
functions.py
plots.py

The first file leads you through my data creation and processing step by step. You can choose how many of my data you want to use or reproduce by yourself.

The executable-file needs the functions from "functions" and "plots" in order to run correctly.

Creator: Aaron Laier

Submitter: Aaron Laier

Investigations: 1 hidden item

Studies: Extending Eulerian Parameter Inference to Singl...

Assays: Final Report

Created: 12th Apr 2023 at 18:28

P.BOO-230324-V1_KC_Protocol

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 21:38, Last updated: 30th Mar 2023 at 22:45

P.BOO-230324-V1_2016_Nov_04_Bronchoscopy_Protocol_vers1.0

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 21:35, Last updated: 30th Mar 2023 at 22:45

P.BOO-230324-V1_2018_June_Bronchoscopy_Protocol_vers2.0

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 21:37, Last updated: 30th Mar 2023 at 22:45

P.BOO-230324-V1_2019_April_Bronchoscopy_Protocol_vers4.0

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 21:37, Last updated: 30th Mar 2023 at 22:45

P.BOO-230324-V1_2020_Jan_Bronchoscopy_Protocol_vers4.0

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 21:38, Last updated: 30th Mar 2023 at 22:45

P.SWA-230302-V1_Jeol-Accu-ToF_05252022

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Interaction of N-Nitroamines with Bincuelar Cop...

Assays: High Resolution Mass Spectra - Data Linked

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Created: 16th Mar 2023 at 17:16, Last updated: 16th Mar 2023 at 17:24

P.SWA-230223-V1_synthesis-protocol

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Interaction of N-Nitroamines with Bincuelar Cop...

Assays: Chemical Synthesis - Metadata

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Created: 16th Mar 2023 at 17:13, Last updated: 16th Mar 2023 at 17:23

P.SWA-230302-V1_Fluorescence-and-XPS

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Interaction of N-Nitroamines with Bincuelar Cop...

Assays: Absorption and Emission Spectroscopy - Data Linked, X-ray Photoelectron Spectroscopy - Data Linked

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Created: 16th Mar 2023 at 17:14, Last updated: 16th Mar 2023 at 17:23

P.SWA-230302-V1_Mass-Spectrometry

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Interaction of N-Nitroamines with Bincuelar Cop...

Assays: High Resolution Mass Spectra - Data Linked

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Created: 16th Mar 2023 at 17:15, Last updated: 16th Mar 2023 at 17:23

P.SWA-230302-V1_NMR

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Interaction of N-Nitroamines with Bincuelar Cop...

Assays: Nuclear Magnetic Resonance Spectroscopy - Data ...

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Created: 16th Mar 2023 at 17:17, Last updated: 16th Mar 2023 at 17:23

P.ESS-201123-V1_gpt-NextGen-Protocol-.pdf

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: GPT Assay - Data Attached

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Created: 8th Mar 2023 at 19:27, Last updated: 8th Mar 2023 at 22:52

P.ESS-230303-V1_Data-processing-(alignment).docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Genome Alignment - Data Linked, Mutational Spectral Analysis - Data Attached

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Created: 8th Mar 2023 at 19:32, Last updated: 8th Mar 2023 at 22:52

P.ESS-230303-V2_Cell-culture.docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:28, Last updated: 8th Mar 2023 at 22:52

P.ESS-230308-V2_Duplex-sequencing.docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Illumina Sequencing - Data Linked

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Created: 8th Mar 2023 at 19:30, Last updated: 8th Mar 2023 at 22:52

P.ENG-200831-V1_NDMA-Juvenile-Mouse-Injection-Protocol.pdf

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:35, Last updated: 8th Mar 2023 at 22:52

P.ENG-200806-V2_Short-Term-Collection-at-Necropsy.pdf

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:35, Last updated: 8th Mar 2023 at 22:52

P.ENG-220105-V1_NDMA-Juvenile-Mouse-Single-Injection-Protocol.docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:36, Last updated: 8th Mar 2023 at 22:52

P.ENG-220105-V1_Tissue-Collection-at-Necropsy-(2021).docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:37, Last updated: 8th Mar 2023 at 22:52

Protocols file

NL-Bioimaging FAIR Metadata Templates

This file is associated with performed study and describes protocols used.

Creator: Rohola Hosseini

Submitter: Rohola Hosseini

Investigations: Minimal Information for High Content Screening ...

Studies: MIHCSME templates

Assays: MIHCSME template example for “Temporal single c...

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Created: 3rd Feb 2023 at 11:57, Last updated: 3rd Feb 2023 at 14:02

SOP Library file

NL-Bioimaging FAIR Metadata Templates

Associated library SOP file with metadata template.

Creator: Rohola Hosseini

Submitter: Rohola Hosseini

Investigations: Minimal Information for High Content Screening ...

Studies: MIHCSME templates

Assays: MIHCSME template example for compound screen on...

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Created: 3rd Feb 2023 at 12:07, Last updated: 3rd Feb 2023 at 14:02

test licence

Perennial ryegrass

No description specified

Creator: Flora D'Anna

Submitter: Flora D'Anna

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

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Created: 3rd Aug 2021 at 14:32, Last updated: 23rd Jan 2023 at 15:27

P.HEM-220913-V2_20210610_fieldworkOperatingProc.docx

MIT SRP

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: MIT SRP

Studies: Benthic fluxes of fluorescent dissolved organic...

Assays: Field Water Sensor Run

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Created: 11th Oct 2022 at 13:57, Last updated: 17th Oct 2022 at 19:23

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