SOPs

What is a SOP?

488 SOPs visible to you, out of a total of 786

P.BRY-241219-V1_HMDM-Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Systematic deconstruction of myeloid cell signa...

Assays: Cell Isolation - Metadata, Library Creation - Metadata, Short Read Sequencing - Data Linked, Tissue Collection - Metadata

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Created: 27th Mar 2025 at 20:03, Last updated: 28th Mar 2025 at 17:32

P.BRY-250327-V1_NHP_Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Systematic deconstruction of myeloid cell signa...

Assays: Patient Visit - Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2025 at 19:43, Last updated: 28th Mar 2025 at 17:32

P.WHI-250319-V1_SureQuant_Protocol.pdf

Cancer Systems Biology Consortium (CSBC)

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: CSBC

Studies: Validation and quantification of peptide antige...

Assays: ImmunoPeptideomics - Data Linked, SureQuant Analysis - Data Linked

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Created: 19th Mar 2025 at 18:03

P.WHI-250319-V1_SureQuant_SampleProcessing.docx

Cancer Systems Biology Consortium (CSBC)

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: CSBC

Studies: Validation and quantification of peptide antige...

Assays: Sample Processing - Metadata

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Created: 19th Mar 2025 at 18:02

SOP – Protein preparation, nanoLC-MS/MS analyses of peptides and protein identification

Proteogneomics of Desulfobacteraceae members

No description specified

Creator: Lars Wöhlbrand

Submitter: Lars Wöhlbrand

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 18th Apr 2024 at 08:23, Last updated: 12th Mar 2025 at 11:14

P.SAS-240923-V1_RSTR_scRNA-CITESEQ.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Comparable Non-canonical T cell responses are a...

Assays: CITESEQ Analysis - Data Linked, Library Prep - Metadata, Short Read Sequencing - Data Linked

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Created: 23rd Sep 2024 at 18:30, Last updated: 25th Feb 2025 at 21:01

P.SAS-241009-V1_TransCompR-Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Comparable Non-canonical T cell responses are a...

Assays: Model Validation - Data Linked

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Created: 9th Oct 2024 at 18:46, Last updated: 25th Feb 2025 at 21:01

P.SAS-250124-V1_Histology-Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Comparable Non-canonical T cell responses are a...

Assays: Histology - Data Linked

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Created: 24th Jan 2025 at 20:46, Last updated: 25th Feb 2025 at 21:01

P.SAS-240923-V1_RSTR_Mice_SOP.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Comparable Non-canonical T cell responses are a...

Assays: Pathogen Challenge and Antibody Depletion - Met..., Tissue Collection - Metadata

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Created: 23rd Sep 2024 at 17:04, Last updated: 25th Feb 2025 at 21:01

P.SAS-240827-V1_RSTR_BMDM_protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Comparable Non-canonical T cell responses are a...

Assays: Cell Isolation - Metadata

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Created: 23rd Sep 2024 at 17:44, Last updated: 25th Feb 2025 at 21:01

P.SAS-220203-V1_Flow-protocol-for-SEEK.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Comparable Non-canonical T cell responses are a...

Assays: Flow Cytometry - Data Linked

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Created: 23rd Sep 2024 at 17:52, Last updated: 25th Feb 2025 at 21:01

P.SAS-240923-V1_RSTR_Flow_Analysis.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Comparable Non-canonical T cell responses are a...

Assays: Flow Cytometry Analysis - Data Linked

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Created: 23rd Sep 2024 at 18:22, Last updated: 25th Feb 2025 at 21:01

P.SAS-241120-V1_RNAseq-Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Systems-level computational translation of mous...

Assays: Library Prep: Validation Data - Metadata, RNA Extraction: Validation Data - Metadata, Short Read Sequencing: Validation Data - Data L...

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Created: 5th Feb 2025 at 19:39, Last updated: 5th Feb 2025 at 23:00

P.SAS-241121-V1_qPCR-Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Systems-level computational translation of mous...

Assays: PCR: Validation Data - Data Attached

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Created: 5th Feb 2025 at 20:02, Last updated: 5th Feb 2025 at 23:00

P.SAS-241121-V1_RNAseq-Analysis-Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Systems-level computational translation of mous...

Assays: Gene Expression Analysis: Validation Data - Dat...

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Created: 5th Feb 2025 at 21:58, Last updated: 5th Feb 2025 at 23:00

P.SAS-241120-V1_BSRA-Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Systems-level computational translation of mous...

Assays: Bacterial Survivability Restriction Assay: Vali...

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Created: 5th Feb 2025 at 22:28, Last updated: 5th Feb 2025 at 23:00

P.SAS-241120-V1_Bacterial-culture-protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Systems-level computational translation of mous...

Assays: Cell Extraction: Validation Data - Metadata

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Created: 5th Feb 2025 at 19:29, Last updated: 5th Feb 2025 at 23:00

P.SAS-241120-V1_Cell-culture-protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Systems-level computational translation of mous...

Assays: Cell Extraction: Validation Data - Metadata

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Created: 5th Feb 2025 at 19:32, Last updated: 5th Feb 2025 at 23:00

P.FLY-250203-V1_IVBCG-AS-NHP-Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Intravenous BCG-mediated protection against tub...

Assays: Patient Visit - Metadata, Tissue Collection - Metadata

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Created: 3rd Feb 2025 at 20:58, Last updated: 4th Feb 2025 at 00:56

P.KAM-240712_V1_GFP_FACS.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Polyploidy of MDA-MB-231 cells drives increased...

Assays: Fluorescence-Activated Cell Sorting - Data Linked

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Created: 12th Jul 2024 at 17:47, Last updated: 15th Jan 2025 at 19:10

P.KAM-240712_V1_GFP_Size-and-Proliferation.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Polyploidy of MDA-MB-231 cells drives increased...

Assays: Cell Culture Imaging - Data Linked, Cell Culture Imaging Analysis - Data Linked

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Created: 12th Jul 2024 at 17:48, Last updated: 15th Jan 2025 at 19:10

P.KAM-240712_V1_GFP_RNAseq.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Polyploidy of MDA-MB-231 cells drives increased...

Assays: Gene Expression Analysis - Data Linked, Library Prep - Metadata, RNA Extraction - Metadata, Short Read Sequencing - Data Linked

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Created: 12th Jul 2024 at 17:49, Last updated: 15th Jan 2025 at 19:10

P.KAM-240712_V1_GFP_rtPCR.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Polyploidy of MDA-MB-231 cells drives increased...

Assays: Real-time RT-PCR - Data Linked

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Created: 12th Jul 2024 at 17:50, Last updated: 15th Jan 2025 at 19:10

P.KAM-240712_V1_GFP_CellCulture.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Polyploidy of MDA-MB-231 cells drives increased...

Assays: Cell Culture - Metadata

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Created: 12th Jul 2024 at 17:42, Last updated: 15th Jan 2025 at 19:10

P.KAM-240712_V1_GFP_OOC-MVN_Protocol.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Polyploidy of MDA-MB-231 cells drives increased...

Assays: Microvascular Network Formation - Metadata

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Created: 12th Jul 2024 at 17:44, Last updated: 15th Jan 2025 at 19:10

P.KAM-240712_V1_GFP_Extravasation.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Polyploidy of MDA-MB-231 cells drives increased...

Assays: Cancer Cell Extravasation Analysis - Data Linked, Microfluidic Device Imaging - Data Linked

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Created: 12th Jul 2024 at 17:46, Last updated: 15th Jan 2025 at 19:10

P.ENG-240312_V1_CellCulture.docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: CometChip Enables Parallel Analysis of Multiple...

Assays: Comet Chip Analysis - Data Attached

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Created: 12th Mar 2024 at 18:36, Last updated: 13th Jan 2025 at 20:14

P.ENG-240312_V1_CometChip.docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: CometChip Enables Parallel Analysis of Multiple...

Assays: Comet Chip Analysis - Data Attached

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Created: 12th Mar 2024 at 18:44, Last updated: 13th Jan 2025 at 20:14

P.BRY-241204-V1_StudyDesign_JP_IVBCG.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: High-dose intravenous BCG vaccination induces e...

Assays: Patient Visit - Metadata, Tissue Collection - Metadata

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Created: 4th Dec 2024 at 19:57

P.LAU-240111-V1_SW_LMM_ReadMe.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Multi-modal data integration using Markov Field...

Assays: Model Validation

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Created: 17th Sep 2024 at 20:21

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