SOPs

What is a SOP?

488 SOPs visible to you, out of a total of 786

P.ENG-260505-V1_lp-wblt.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Persistent interferon signaling and clonal expa...

Assays: Western Blot - Data Linked, Western Blot Analysis - Data Linked

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Created: 21st May 2026 at 15:50, Last updated: 21st May 2026 at 15:50

P.ENG-260505-V1_lp-spatial.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Persistent interferon signaling and clonal expa...

Assays: Library Creation - Metadata, Spatial Transcriptomics - Data Linked, Spatial Transcriptomics Analysis - Data Linked

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Created: 21st May 2026 at 15:49, Last updated: 21st May 2026 at 15:50

P.ENG-260505-V1_lp-rnaseq.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Persistent interferon signaling and clonal expa...

Assays: Gene Expression Analysis - Data Linked, Library Creation - Metadata, Short Read Sequencing - Data Linked

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Created: 21st May 2026 at 15:49, Last updated: 21st May 2026 at 15:49

P.ENG-260505-V1_lp-radr.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Persistent interferon signaling and clonal expa...

Assays: Imaging - Data Linked, Imaging Analysis - Data Linked

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Created: 21st May 2026 at 15:49, Last updated: 21st May 2026 at 15:49

P.ENG-260521-V1_lp-phospho.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Persistent interferon signaling and clonal expa...

Assays: Phosphoproteomics Analysis - Data Linked

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Created: 21st May 2026 at 15:48, Last updated: 21st May 2026 at 15:49

P.ENG-260505-V1_lp-ihc.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Persistent interferon signaling and clonal expa...

Assays: Imaging - Data Linked, Imaging Analysis - Data Linked

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Created: 21st May 2026 at 15:48, Last updated: 21st May 2026 at 15:48

P.ENG-260505-V1_lp-if.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Persistent interferon signaling and clonal expa...

Assays: Imaging - Data Linked, Imaging Analysis - Data Linked

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Created: 21st May 2026 at 15:47, Last updated: 21st May 2026 at 15:48

P.ENG-260505-V1_lp-histological.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Persistent interferon signaling and clonal expa...

Assays: Imaging - Data Linked, Imaging Analysis - Data Linked

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Created: 21st May 2026 at 15:47, Last updated: 21st May 2026 at 15:47

P.ENG-260506-V1_lp-flow.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Persistent interferon signaling and clonal expa...

Assays: Flow Cytometry - Data Linked, Flow Cytometry Analysis - Data Linked

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Created: 21st May 2026 at 15:46, Last updated: 21st May 2026 at 15:47

P.ENG-260505-V1_lp-animals.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Persistent interferon signaling and clonal expa...

Assays: Mouse Challenge - Metadata, Tissue Collection - Metadata

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Created: 21st May 2026 at 15:46, Last updated: 21st May 2026 at 15:46

P.ENG-260505-V1_lp-adducts.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Persistent interferon signaling and clonal expa...

Assays: DNA Adduct Analysis - Data Linked

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Created: 21st May 2026 at 15:46, Last updated: 21st May 2026 at 15:46

Sample handling and measurement

Phage infection in Nitrosomonas europaea

No description specified

Creators: Meina Neumann-Schaal, Sarah Kirstein

Submitter: Meina Neumann-Schaal

Investigations: Metabolite profiles after phage infection

Studies: Metabolite profiling

Assays: Non-volatile metabolites

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Created: 9th Dec 2025 at 13:13, Last updated: 17th Apr 2026 at 10:48

P.BMC-260326-V1_iconPCR-analysis.docx

NExtSEEK Independent Projects

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: BioMicro Center

Studies: IMPACT OF FLUORESCENT DYES ON MUTATIONS IN NEXT...

Assays: Mutational Spectral Analysis - Data Linked, Variant Calling - Data Linked

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Created: 15th Apr 2026 at 19:21, Last updated: 15th Apr 2026 at 19:34

P.BMC-260326-V1_iconPCR-libraryPrep.docx

NExtSEEK Independent Projects

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: BioMicro Center

Studies: IMPACT OF FLUORESCENT DYES ON MUTATIONS IN NEXT...

Assays: Library Prep - Metadata

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Created: 15th Apr 2026 at 19:21, Last updated: 15th Apr 2026 at 19:34

P.BMC-260326-V1_iconPCR-sequencing.docx

NExtSEEK Independent Projects

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: BioMicro Center

Studies: IMPACT OF FLUORESCENT DYES ON MUTATIONS IN NEXT...

Assays: Genome Alignment - Data Linked, Short Read Sequencing - Data Linked

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Created: 15th Apr 2026 at 19:21, Last updated: 15th Apr 2026 at 19:34

western_blot_LinVo-Dec2025.pdf

MIT SRP

No description specified

Creators: None

Submitter: Taïsha Joseph-Risch

Investigations: MIT SRP

Studies: Early life exposure to N-nitrosamine drives gen...

Assays: Protein Extraction - Metadata, Western Blot - Data Linked

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Created: 2nd Apr 2026 at 01:23, Last updated: 2nd Apr 2026 at 01:24

statistics.pdf

MIT SRP

No description specified

Creators: None

Submitter: Taïsha Joseph-Risch

Investigations: MIT SRP

Studies: Early life exposure to N-nitrosamine drives gen...

Assays: Genome Alignment - Data Linked, Imaging Analysis - Data Linked, Mutational Spectra Analysis - Data Linked

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Created: 2nd Apr 2026 at 01:23, Last updated: 2nd Apr 2026 at 01:23

radr.pdf

MIT SRP

No description specified

Creators: None

Submitter: Taïsha Joseph-Risch

Investigations: MIT SRP

Studies: Early life exposure to N-nitrosamine drives gen...

Assays: Tissue Imaging - Data Linked

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Created: 2nd Apr 2026 at 01:22, Last updated: 2nd Apr 2026 at 01:23

necropsy_histopathology_LinVo-Dec2025.pdf

MIT SRP

No description specified

Creators: None

Submitter: Taïsha Joseph-Risch

Investigations: MIT SRP

Studies: Early life exposure to N-nitrosamine drives gen...

Assays: Tissue Collection - Metadata, Tissue Imaging - Data Linked, Tissue Sectioning - Metadata

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Created: 2nd Apr 2026 at 01:22, Last updated: 2nd Apr 2026 at 01:22

mouse_protocol_LiVo-Dec2025.pdf

MIT SRP

No description specified

Creators: None

Submitter: Taïsha Joseph-Risch

Investigations: MIT SRP

Studies: Early life exposure to N-nitrosamine drives gen...

Assays: Tissue Collection - Metadata

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Created: 2nd Apr 2026 at 01:21, Last updated: 2nd Apr 2026 at 01:21

histology_immunofluorescence.pdf

MIT SRP

No description specified

Creators: None

Submitter: Taïsha Joseph-Risch

Investigations: MIT SRP

Studies: Early life exposure to N-nitrosamine drives gen...

Assays: Tissue Imaging - Data Linked

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Created: 2nd Apr 2026 at 01:20, Last updated: 2nd Apr 2026 at 01:21

gpt_delta_assay_LinVo-Dec2025.pdf

MIT SRP

No description specified

Creators: None

Submitter: Taïsha Joseph-Risch

Investigations: MIT SRP

Studies: Early life exposure to N-nitrosamine drives gen...

Assays: DNA Extraction - Metadata, GPT Assay - Data Linked, Library Prep - Metadata

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Created: 2nd Apr 2026 at 01:20, Last updated: 2nd Apr 2026 at 01:20

RNA Extraction Protocol.docx

MIT SRP

No description specified

Creators: None

Submitter: Taïsha Joseph-Risch

Investigations: MIT SRP

Studies: Early life exposure to N-nitrosamine drives gen...

Assays: RNA Isolation - Metadata, Short Read Sequencing - Data Linked

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Created: 2nd Apr 2026 at 01:19, Last updated: 2nd Apr 2026 at 01:19

Materials_and_methods_v4.docx

MIT SRP

No description specified

Creators: None

Submitter: Taïsha Joseph-Risch

Investigations: MIT SRP

Studies: Early life exposure to N-nitrosamine drives gen...

Assays: DNA Extraction - Metadata, Library Prep - Metadata, Short Read Sequencing - Data Linked

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Created: 2nd Apr 2026 at 01:18, Last updated: 2nd Apr 2026 at 01:19

Adduct Analyses Methods - LINDSAY_MS.docx

MIT SRP

No description specified

Creators: None

Submitter: Taïsha Joseph-Risch

Investigations: MIT SRP

Studies: Early life exposure to N-nitrosamine drives gen...

Assays: DNA Extraction - Metadata, Library Prep - Metadata, Mass Spectrometry - Data Linked

Download

Created: 2nd Apr 2026 at 01:18, Last updated: 2nd Apr 2026 at 01:18

P.PLA-260213-V1_NB-Simulation.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Partitioning parameters of N-nitrosamines: An i...

Assays: Chemical Simulations - Data Linked

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Created: 23rd Mar 2026 at 16:28, Last updated: 23rd Mar 2026 at 16:29

P.PLA-260213-V1_NB-ShakeFlask.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Partitioning parameters of N-nitrosamines: An i...

Assays: Experimental Physiochemical Measurement - Data ..., Experimental Physiochemical Measurement Analysi...

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Created: 23rd Mar 2026 at 16:28, Last updated: 23rd Mar 2026 at 16:28

P.PLA-260213-V1_NB-Materials.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Partitioning parameters of N-nitrosamines: An i...

Assays: Chemical Simulations - Data Linked, Experimental Physiochemical Measurement - Data ...

Download

Created: 23rd Mar 2026 at 16:28, Last updated: 23rd Mar 2026 at 16:28

P.SHA-230410-V1_How_to_NextSeq2000_10X.docx

MetNet

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: BCG vaccination induces antibacterial effector ...

Assays: Short Read Sequencing - Data Linked

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Created: 4th Mar 2026 at 15:52, Last updated: 4th Mar 2026 at 21:21

P.SES-260107-V1_mass-flow-cyto-MM.docx

Hi-IMPAcTB

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: BCG vaccination induces antibacterial effector ...

Assays: Flow Cytometry - Data Linked, Mass Cytometry - Data Linked

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Created: 4th Mar 2026 at 15:53, Last updated: 4th Mar 2026 at 16:10

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