Shotgun and geLC MS/MS analysis of the solble and membrane protein-enriched fraction of clonal enrichment culture BzS1

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The soluble and membrane protein-enriched fraction of clonal enrichment culture BzS1 were prepared and analyzex by means of nanoLC separation of generated peptides coupled to ESI-iontrap MS/MS.

SEEK ID: https://fairdomhub.org/studies/1517

Investigation: Shotgun and geLC MS/MS data of clonal enrichment culture BzS1

Projects: Shotgun and geLC MS/MS data of clonal enrichment culture BzS1

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Creators and Submitter

Creator

Lars Wöhlbrand

Submitter

Lars Wöhlbrand

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Views: 15

Created: 13th Jul 2026 at 06:35

Last updated: 13th Jul 2026 at 08:18

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Programmes (1)
Projects (1)
Investigations (1)
Assays (4)
Data files (6)
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Lars Wöhlbrand

Projects: EbN1 Systems Biology, Heat stress response of the red-tide dinoflagellate Prorocentrum cordatum, The nucleus of Prorocentrum cordatum, Conspicuous chloroplast with LHC‒PSI/II‒megacomplex and diverse PBPs in the marine dinoflagellate Prorocentrum cordatum, Proteogneomics of Desulfobacteraceae members, Shotgun and geLC MS/MS data of clonal enrichment culture BzS1

Institutions: Carl von Ossietzky University of Oldenburg Institute for Chemistry and Biology of the Marine Environment (ICBM), General and Molecular Microbiology, General and Molecular Microbiology, Carl von Ossietzky University of Oldenburg Institute for Chemistry and Biology of the Marine Environment (ICBM)

https://orcid.org/0000-0001-7253-3373

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Independent Project

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Projects: Proteogneomics of Desulfobacteraceae members, Shotgun and geLC MS/MS data of clonal enrichment culture BzS1

Web page: Not specified

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Shotgun and geLC MS/MS data of clonal enrichment culture BzS1

Due to its high chemical stability, the biodegradation of benzene is the most challenging amongst hydrocarbons. While oxygen-dependent oxygenases are employed by aerobic bacteria to overcome the energy barrier, the mechanism of anaerobic benzene biodegradation is still enigmatic. The sulfate-reducing, clonal enrichment culture BzS1 is capable of benzene degradation under anoxic conditions. In addition, the alkylbenzene toluene may be used as sole source of carbon and energy. In this project, the ...

Programme: Independent Project

Public web page: Not specified

Organisms: Not specified

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Shotgun and geLC MS/MS data of clonal enrichment culture BzS1

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Lars Wöhlbrand

Submitter: Lars Wöhlbrand

Studies: Shotgun and geLC MS/MS analysis of the solble and membrane protein-enric...

Assays: Membrane protein-enriched fraction of clonal enrichment culture BzS1 dur..., Membrane protein-enriched fraction of clonal enrichment culture BzS1 dur..., Soluble protein fraction of clonal enrichment culture BzS1 during growth..., Soluble protein fraction of clonal enrichment culture BzS1 during growth...

Snapshots: Shotgun and geLC MS/MS data of clonal enrichment culture BzS1

DOI: 10.15490/fairdomhub.1.investigation.823.1

Created: 13th Jul 2026 at 06:30, Last updated: 13th Jul 2026 at 08:18

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Membrane protein-enriched fraction of clonal enrichment culture BzS1 during growth with benzene

Shotgun and geLC MS/MS data of clonal enrichment culture BzS1

All creators

Lars Wöhlbrand

Peaklist files (.mgf) and mascot search files are provided per analysis. Each sample replicate was separated by gel electrophoresis and subdivided into 8 gel-slices. These were subjected to in-gel digest and LC ESI-iontrap MS/MS analyses.

Submitter: Lars Wöhlbrand

Assay type: Protein Identification

Technology type: Liquid Chromatography-tandom Mass Spectrometry

Investigation: Shotgun and geLC MS/MS data of clonal enrichmen...

Study: Shotgun and geLC MS/MS analysis of the solble a...

Organisms: No organisms

SOPs: SOP preparation of protein fractions and analys...

Data files: Membrane protein-enriched fraction, benzene

Snapshots: No snapshots

Created: 13th Jul 2026 at 06:38, Last updated: 13th Jul 2026 at 08:18

Membrane protein-enriched fraction of clonal enrichment culture BzS1 during growth with toluene

Shotgun and geLC MS/MS data of clonal enrichment culture BzS1