SOPs
What is a SOP?This is the pdf of the Jupyter Notebook to allow looking at the notebook without installing anything. It is a simple example of how a Selwyn test can look like if it is passed (1.) or failed (2.).
Creator: Gudrun Gygli
Submitter: Gudrun Gygli
This is the Jupyter Notebook to allow editing and working with the code. It is a simple example of how a progress curve experiment can look like.
Creator: Gudrun Gygli
Submitter: Gudrun Gygli
This is the pdf of the Jupyter Notebook to allow looking at the notebook without installing anything. It is a simple example of how a progress curve experiment can look like.
Creator: Gudrun Gygli
Submitter: Gudrun Gygli
This is the pdf of the Jupyter Notebook to allow looking at the notebook without installing anything.
NOTE THAT this pdf may be mangled when viewed on FAIRDOMHub, but should look fine when downloaded.
Creator: Gudrun Gygli
Submitter: Gudrun Gygli
This is a zip file containing all the files and folders needed to analyse raw data, fit initial rates and create a "Michaelis-Menten plot". Instructions on usage are added in the notebook.
Creator: Gudrun Gygli
Submitter: Gudrun Gygli
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
This is the Jupyter Notebook to allow editing and working with the code.
Design an initial rate experiment in four steps
This script aims to help you design high-quality initial rate experiments. It uses the Michaelis-Menten equation to simulate data for an enzyme with unknown enzyme reaction parameters. Four steps are needed:
- Estimate the enzyme reaction parameters
Input: estimates of Km and vmax
and indicate the enzyme concentration concentration you are planning to use. If you have no ...
Creator: Gudrun Gygli
Submitter: Gudrun Gygli
This is the pdf of the Jupyter Notebook to allow looking at the notebook without installing anything.
Design an initial rate experiment in four steps
This script aims to help you design high-quality initial rate experiments. It uses the Michaelis-Menten equation to simulate data for an enzyme with unknown enzyme reaction parameters. Four steps are needed: 1. Estimate the enzyme reaction parameters
Input: estimates of Km and vmax
and indicate the enzyme concentration concentration you are planning ...
Creator: Gudrun Gygli
Submitter: Gudrun Gygli
Next-Gen GPT Assay Protocol
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Collection of Tissues at Necropsy of Short-Term Animals
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Medium-Term Tissue Collection at Necropsy
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Extraction procedure and lipid analysis.
Creators: Zdenka Bartosova, Jon Olav Vik, Per Bruheim, Thomas Harvey
Submitter: Zdenka Bartosova
Winter conditions for 5 weeks (6th october – 10th November):
- Light on 12 hours per day
- Turn off water heating
- Feeding probably needs to be adjusted according to lower metabolism and feed intake in cold water
Spring condition (10th of November – 15th of December):
- Water heating on
- constant light (24hrs/day)
Vaccination (when and by whom?)
Transfer to sea-water (15th of December)
Last sampling for GenoSysFat in sea water (5th January – 25th of January).
Source: email with subject ...
Creators: Jon Olav Vik, Sandve Simen
Submitter: Jon Olav Vik
Source: Tom Harvey [E- mail from Jon Olav 19 May 2016]
Creators: Graceline Tina Kirubakaran, Thomas Harvey, Jacob Seilø Torgersen
Submitter: Graceline Tina Kirubakaran
Use this template when you upload RNA sequencing data. Email : 31 May 2016 More columns need to be added PE/SE etc?
Creators: Graceline Tina Kirubakaran, Jon Olav Vik, Thomas Harvey, Sandve Simen, Hanne Hellerud Hansen
Submitter: Graceline Tina Kirubakaran
Describes the workflow used for preparation of a 16S rRNA gene amplicon (V3-V4 region) Library for sequencing on a MiSeq platform (Illumina) using V3 sequencing chemistry with 300 base pairs paired-end reads.
Creators: Inga Leena Angell, Jon Olav Vik, Graceline Tina Kirubakaran, Sahar Hassani
Submitter: Inga Leena Angell
Describes how the DNA was isolated from salmon intestinal samples before preparations of 16S rRNA gene amplicons for the Illumina MiSeq system.
Creators: Stuart Owen, Sahar Hassani, RAGNHILD ÅNESTAD, Jesse van Dam, Dagmar Waltemath, Kristina Vagonyte-Hallan, Kristil Sundsaasen, Natalie Stanford, Lars Snipen, Sandve Simen, Jacob Seilø Torgersen, Inga Leena Angell, Dominic Nanton, Vitor Martins dos Santos, Torgeir R. Hvidsten, Thomas Harvey, Hanne Hellerud Hansen, Fabian Grammes, Arne Gjuvsland, Gareth Gillard, Graceline Tina Kirubakaran, Jon Olav Vik
Submitter: Inga Leena Angell
Gre2p activity monitored by NADPH absorbance using different enzyme concentrations. Activity is measured after different storage conditions (treatments) and in presence of different amounts of tween.
A python workflow is used to analyse the data and create a plot where the outcomes of the Selwyn test are plotted. It requires the following directory structure:
./Sewlyn_test_forS19.py ./tween/M1.csv ./tween/M2.csv ./tween/M3.csv ./tween/M4.csv ./treatments/M1.csv ./treatments/M2.csv ./treatments/M3.csv ...
Creators: Gudrun Gygli, Felix Ott
Submitter: Gudrun Gygli