Models

What is a Model?
418 Models visible to you, out of a total of 662

Simplified model file for PLaSMo accession ID PLM_83, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_83, version 1

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_84, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_84, version 1

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_86, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_86, version 1

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_85, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_85, version 1

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_88, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_88, version 1

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_87, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_87, version 1

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_92, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_92, version 1

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_91, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_91, version 1

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_90, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_90, version 1

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_89, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_89, version 1

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_89, version 2 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_89, version 2

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

No description specified

Creator: Malgorzata Adamczyk

Submitter: Malgorzata Adamczyk

Bayesian model for inference of the activity of transcription factors from targets' mRNA levels. A standalone C sharp package (runs on linux and mac under MONO).

Creator: Guido Sanguinetti

Submitter: Guido Sanguinetti

Code for joint probabilistic inference of transcription factor behaviour and gene-transcription factor as well as metabolite-transcription factor interaction based on genome and metabolite data.

Creators: Botond Cseke, Guido Sanguinetti

Submitter: Botond Cseke

TGF beta signalling

Creator: Francesco Messina

Submitter: Marek Ostaszewski

Metabolic interactions of the SARS-CoV-2 Nsp14 with the human galactose, nicotinate and nicotinamide, and purine metabolism.

Creators: Alina Renz, Andreas Dräger

Submitter: Marek Ostaszewski

Mathematical model for TPI kinetics, GAP and DHAP saturation, and inhibition with 3PG and PEP.

Creator: Jacky Snoep

Submitter: Jacky Snoep

Mathematica notebook for the parameterisation of the TPI rate equation based on SEEK linked experimental data.

Creators: Dawie van Niekerk, Jacky Snoep

Submitter: Dawie van Niekerk

The zip file contains two executable Matlab functions.

File named 'fnct_gen_tfcompmod.m' generates a Simbiology model based on the following interactions: R + X <-> RX -> R + X + Px R + Y <-> RY -> R + Y + Py R + Z <-> RZ -> R + Z + Pz Y + Pz -> Pz Px -> Py -> Pz ->

We assume much higher reaction speeds of sigma factor RNApol binding/unbinding compared to protein expression. Protein expression can therefore be represented by Michaelis-Menten like kinetic ...

Creator: Ulf Liebal

Submitter: Ulf Liebal

No description specified

Creator: Daniel Seaton

Submitter: Daniel Seaton

Originally submitted model file for PLaSMo accession ID PLM_5, version 1

Creators: BioData SynthSys, Robert Muetzelfeldt

Submitter: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_7, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_7, version 1

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_7, version 2 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_7, version 2

Creators: BioData SynthSys, Carl Troein, Andrew Millar

Submitter: BioData SynthSys

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