Models
What is a Model?Filters
Query
Created At
Updated At
Tag
Arabidopsis6
Clock5
Morpheus5
ODE5
Clostridium acetobutylicum4
genome-scale metabolic reconstruction4
pH4
SBML4
annotation3
Flowering3
pH-induced metabolic shift3
Systems Biology3
aromatic compounds2
CellDesigner2
FBA2
Glycolysis2
Matlab2
Metabolic Engineering2
P20112
phosphate-limited continuous culture2
plant growth2
R script2
scSYnO2
arabidopsis thaliana1
Binding energy1
Bioinformatics1
BioNLP1
bustools1
butanol producing strain e.coli1
butanol production1
carbon partitioning1
circadian rhythms1
Class Imbalance1
Clocks1
coil1
continuous culture1
Copasi1
COVID-191
development1
dynamic FBA1
dynamic model1
dynamics1
e.coli with beta oxidation1
Flavonoid1
gene expression1
genome scale1
Glycolytic oscillation1
GPML1
GRID1
GSM1
heat1
Innate immunity and proinflammatory response1
innitial values1
kallisto1
Kinetic modelling1
l-fucose1
Mathematical modeling1
metabolic shift1
metabolism1
metabolites1
Metabolomics1
metano1
MIRIAM1
modifiers1
Molecular Dynamics1
Multi-cellular model1
multi-compartment model1
optical density1
organogenesis1
PAMPs1
Pathways1
pH-shift1
phosphate ion1
phosphate limitation1
photoperiod1
photosynthesis1
Phytochrome1
plasmodium1
population dynamics1
population growth1
Protein degradation1
Proteomics1
Pseudomonas putida1
quenching1
quorum sensing1
R1
RobOKoD redesigned1
Saccharomyces cerevisiae1
SARS-CoV-21
SBO1
scRNA-Seq1
sporulation1
spread in population1
steady state1
stoichiometric model1
Streptomyces coelicolor1
sucrose1
sugar1
Sulfolobus solfataricus1
Systomodel1
temperature1
Ubiquitination1
unix1
wikipathways1
World model1
More...
Submitter
BioData SynthSys117
Dawie van Niekerk46
Jacky Snoep45
Marek Ostaszewski27
Uriel Urquiza Garcia20
Franco du Preez17
Andrew Millar12
Ulf Liebal10
Alexey Kolodkin8
Hans V. Westerhoff6
Vincent Wagner6
Anna Feldman-Salit5
Markus Wolfien5
Lutz Brusch5
James Wordsworth5
Thomas Millat4
Henning Lindhorst4
Cheewin Kittikunapong4
Christoff Odendaal4
Jennifer Levering3
Nadine Veith3
Fiona Achcar3
Eduard Kerkhoven3
Daniel Seaton3
Niels Zondervan3
Xiaokang Zhang3
Sebastian Höpfl3
Mark Musters2
Maksim Zakhartsev2
Sebastian Henkel2
David Knies2
Natalie Stanford2
Hannah O'Keefe2
Julia Koblitz2
Peter Ruoff1
Sara Jabbari1
Jay Moore1
Michael Ederer1
Afsaneh Maleki-Dizaji1
Sebastian Curth1
Malgorzata Adamczyk1
domenico bellomo1
Jurgen Haanstra1
Hao Bai1
Guido Sanguinetti1
Botond Cseke1
Ettore Murabito1
Ron Henkel1
Helge Stark1
Jacqueline Wolf1
Jon Olav Vik1
Martin Golebiewski1
Matthias König1
Snorre Sulheim1
Robert Muetzelfeldt1
Chloe Spalding1
Saptarshi Bej1
Hannah Kinmonth-Schultz1
Ghadeer Mobasher1
David San León Granado1
Maria Krantz1
Jana Musilova1
More...
Project
PlaSMo model repository117
Millar group35
Whole body modelling of glucose metabolism in malaria patients34
COVID-19 Disease Map28
Computational pathway design for biotechnological applications22
SysMO-LAB20
SysMO DB17
SulfoSys15
Molecular Systems Biology11
BaCell-SysMO10
SulfoSys - Biotec10
SUMO9
Working Group Nicole Radde9
MOSES8
COSMIC7
SilicoTryp6
iRhythmics6
ROS detailed model for MSB manucript6
SynBio4Flav6
Early Metabolic Injury (LiSyM-EMI - Pillar I)5
PoLiMeR - Polymers in the Liver: Metabolism and Regulation5
Selective Destruction in Ageing5
ROBUSTYEAST4
Steroid biosynthesis4
Systems toxicology of Atlantic cod3
MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum animal vaccine3
Manchester Institute for Biotechnology2
Service to Milano-Bicocca with respect to their ATP-ROS model (Active NOW)2
Service to LCSB (Luxembourg) with respect to ROS management in Parkinson’s disease and cancer model (Active NOW)2
COMBINE Multicellular Modelling2
TiMet2
Yeast glycolytic oscillations2
EbN1 Systems Biology2
SteaPKMod2
TRANSLUCENT1
STREAM1
ICYSB 2015 - International Practical Course in Systems Biology1
ZucAt1
DigiSal1
Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF)1
Kinetics on the move - Workshop 20161
INBioPharm1
Systo models1
EraCoBiotech 2 nd call proposal preparation1
Mathematical modelling of the antibiotic-induced morphological transition of Pseudomonas aeruginosa1
Regulation of flowering time in natural conditions1
Outreach - Simulation of breast cancer development using an agent based modelling approach1
Outreach - Simulation of cellular senescence using an agent based modelling approach1
Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population1
ERNEST Mapping Group Pilot Study1
Aneurinibacillus thermoaerophilus CCM 8960 metabolic pathways model1
More...
Programme
SynthSys153
SysMO93
SARCHI: Mechanistic modelling of health and epidemiology62
Disease Maps28
Independent Projects20
de.NBI Systems Biology Service Center (de.NBI-SysBio)11
Journals11
e:Bio10
Model repository for M4 (Make Me My Model) clients of ISBE9
LiSyM - Systems Medicine of the Liver6
Systems Biology Programme6
ERASysAPP4
dCod 1.0: decoding systems toxicology of cod3
COMBINE (Computational Modeling in Biology Network)2
Experimental Transplantation Surgery2
The Digital Salmon1
Mathematical modelling of the morphological transition of Pseudomonas aeruginosa1
Newcastle University Systems Modelling of Ageing1
Breast Cancer Simulation1
ERNEST - European Research Network on Signal Transduction1
Aneurinibacillus thermoaerophilus CCM 8960 metabolic pathways model1
More...
Creator
BioData SynthSys117
Jacky Snoep101
Andrew Millar73
Dawie van Niekerk47
Uriel Urquiza Garcia26
Hans V. Westerhoff14
Franco du Preez11
Ulf Liebal10
Sara Jabbari9
Alexey Kolodkin9
Raju Prasad Sharma7
Anna Feldman-Salit6
Yin Hoon Chew6
Vincent Wagner6
Sylvia Haus5
Barbara Bakker5
Fiona Achcar5
Lutz Brusch5
Daniel Seaton5
James Wordsworth5
Thomas Millat4
Jennifer Levering4
Eduard Kerkhoven4
Markus Wolfien4
Henning Lindhorst4
Terry G.J. Derks4
Cheewin Kittikunapong4
Christoff Odendaal4
Anna Niarakis4
Emmalie Jager4
John King3
Mark Musters3
Maksim Zakhartsev3
Nadine Veith3
Inge Jonassen3
Fekadu Yadetie3
Anders Goksøyr3
Niels Zondervan3
Xiaokang Zhang3
Shirin Fallahi3
Marta Eide3
Hannah O'Keefe3
Eileen Marie Hanna3
Julia Somers3
Sebastian Höpfl3
Dietmar Schomburg2
Sebastian Henkel2
Malgorzata Adamczyk2
Guido Sanguinetti2
Samantha Nolan2
Natalie Stanford2
Helge Stark2
Saptarshi Bej2
Alina Renz2
Andreas Dräger2
Francesco Messina2
Vidisha Singh2
Sara Sadat AGHAMIRI2
Corinna Montrone2
Gisela Fobo2
Gökçe Yağmur Summak2
Ebru Kocakaya2
Julia Koblitz2
Olaf Wolkenhauer1
Bas Teusink1
Ingolf Nes1
Jeroen Hugenholtz1
Rebecca Wade1
Ursula Kummer1
Vitor Martins dos Santos1
Peter Ruoff1
Paul Heusden1
David Hodgson1
Rainer Breitling1
Olga Krebs1
John Heap1
Jay Moore1
Michael Ederer1
Helge Holo1
Afsaneh Maleki-Dizaji1
Sebastian Curth1
Stefan Henrich1
Mike Barrett1
Alejandro Leroux1
domenico bellomo1
Fei He1
Graeme Thorn1
Jurgen Haanstra1
David Knies1
Hao Bai1
Botond Cseke1
Koen van Grinsven1
Margrete Solheim1
Ettore Murabito1
Ron Henkel1
Jacqueline Wolf1
Steffen Waldherr1
Jon Olav Vik1
Arne Gjuvsland1
Dagmar Waltemath1
Yuriy Orlov1
Ilya Akberdin1
Irina Medvedeva1
Sandve Simen1
Fabian Grammes1
Alexandra-M. Reimers1
Jesse van Dam1
Matthias König1
Alexander Mazein1
Chris Evelo1
Jasper Koehorst1
Snorre Sulheim1
Jan Hasenauer1
Robert Muetzelfeldt1
Maria Suarez Diez1
Liv Torunn Mydland1
Wout van Helvoirt1
Peter Schaap1
Tjasa Kumelj1
Filip Rotnes1
Yang Jin1
Chloe Spalding1
Daryl Shanley1
Juan Nogales1
Jörn Starruß1
Marie Gulla1
Hannah Kinmonth-Schultz1
Ove Oyas1
Ghadeer Mobasher1
David San León Granado1
Marcio Acencio1
Matti Hoch1
Alexander Pico1
Marc Gillespie1
Falk Schreiber1
Noriko Hiroi1
Miguel Ponce-de-Leon1
Arnau Montagud1
Rex D A B1
Muhammad Naveez1
Inna Kuperstein1
Tobias Czauderna1
Akira Funahashi1
Cristobal Monraz1
Daniela Börnigen1
Emek Demir1
Hanna Borlinghaus1
Liam Fergusson1
Luana Licata1
Robin Haw1
Takahiro G. Yamada1
Tom Freeman1
Yusuke Hiki1
Zsolt Bocskei1
Franck Augé1
Enrico Glaab1
Julia Scheel1
Peter D'Eustachio1
Andreas Ruepp1
Barbara Brauner1
Goar Frischmann1
Maria Krantz1
Leonard Schmiester1
Vanessa Nakonecnij1
Marius Rameil1
Marta Conti1
Jana Musilova1
Meina Neumann-Schaal1
More...
Organism
Arabidopsis thaliana45
Homo sapiens32
Saccharomyces cerevisiae18
Sulfolobus solfataricus12
Clostridium acetobutylicum10
Escherichia coli10
Bacillus subtilis10
Mus musculus9
Lactococcus lactis6
Trypanosoma brucei6
Plasmodium falciparum6
Lactic Acid Bacteria5
Gadus morhua3
Severe acute respiratory syndrome coronavirus 23
Streptococcus pyogenes2
Streptomyces coelicolor2
Pseudomonas putida2
Mycoplasma pneumoniae2
Streptomyces albus2
Aromatoleum aromaticum2
Enterococcus faecalis1
Rattus norvegicus1
Salmo salar1
Caulobacter1
More...
Model type
Ordinary differential equations (ODE)175
Graphical model24
Algebraic equations22
Metabolic network16
Agent based modelling11
Stoichiometric model11
Partial differential equations (PDE)5
Linear equations2
Boolean network1
More...
418
Models visible to you, out of a total of 662
Originally submitted model file for PLaSMo accession ID PLM_12, version 1
Creators: BioData SynthSys, Robert Muetzelfeldt
Submitter: BioData SynthSys
Model type: Not specified
Model format: Simile XML v3
Environment: Not specified