TFinfer2 Version 1
Code for joint probabilistic inference of transcription factor behaviour and gene-transcription factor as well as metabolite-transcription factor interaction based on genome and metabolite data.
SEEK ID: https://fairdomhub.org/models/106?version=1
1 item is associated with this Model:-
TFinfer2.zip (Zip file - 28.8 KB)
Organism: Escherichia coli
Model type: Not specified
Model format: Matlab package
Execution or visualisation environment: Matlab
Model image: No image specified
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Views: 3256 Downloads: 151
Created: 25th Jan 2013 at 11:13
Last updated: 28th Jan 2013 at 15:30
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Version 1 (earliest) Created 25th Jan 2013 at 11:13 by Botond Cseke
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Related items
Projects: SUMO
Institutions: University of Edinburgh
Projects: SUMO
Institutions: University of Edinburgh
SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".
The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.
Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...
Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep
Web page: http://sysmo.net/
"Systems Understanding of Microbial Oxygen responses" (SUMO) investigates how Escherichia coli senses oxygen, or the associated changes in oxidation/reduction balance, via the Fnr and ArcA proteins, how these systems interact with other regulatory systems, and how the redox response of an E. coli population is generated from the responses of single cells. There are five sub-projects to determine system properties and behaviour and three sub-projects to employ different and complementary modelling ...
Programme: SysMO
Public web page: http://www.sysmo.net/index.php?index=55
