Local sensitivity analysis based on 40 samples - tab seperated file Version 2
Tab seperated file containing the raw output of the local sensitivity analysis based on 40 samples (based on 1000x sampled metabolite values) from the MEAN and SD of the metabolite measurements. Sensitivity analysis is based on the flux through PFK as objective and as proxy for flux through glycolysis. Data can be plotted using the R script "plotLocalGlobalSensitivity1.5.R" associated to the same assay.
SEEK ID: https://fairdomhub.org/data_files/2390?version=2
Filename:
localSensitivity.tsv
Format: Tab-separated values document
Size: 106 MB
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Creators and Submitter
Views: 738 Downloads: 47
Created: 10th Jan 2019 at 13:36
Last updated: 20th Nov 2019 at 18:06
Last used: 27th Feb 2021 at 03:03
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https://orcid.org/0000-0001-7049-5334I am a researcher (PhD student) working at Wageningen University & Research as bioinformatician and modeller. I am working as part of the MycoSynVac (http://www.mycosynvac.eu/) project on dynamic modelling of central carbon metabolism in M. pneumoniae, to be extended to full dynamic modelling of metabolism to be implemented in a whole cell model.
I am also looking into possibilities to improve standards in model generation using semantic technologies, improving automatic generation, annotation
...
The MycoSynVac project AIMS at using cutting-edge synthetic biology methodologies to engineer Mycoplasma pneumoniae as a universal chassis for vaccination.
Designing a universal Mycoplasma chassis that can be deployed as single- or multi-vaccine in a range of animal hosts. Annually, infections caused by Mycoplasma species in poultry, cows, and pigs result in multimillion Euro losses in the USA and Europe.
There is no effective vaccination against many Mycoplasmas that infect pets, humans and farm
...
Programme: Independent Projects
Public web page: http://www.mycosynvac.eu/
1. To develop a whole-cell dynamic model framework of the metabolism of M. pneumoniae
2. To build upon M. pneumoniae models to develop a genome-scale, constraint-based model of M.
hyopneumoniae for vaccine optimization
3. To deploy the metabolic model(s) to: 1) the rational design and optimization of the vaccine chassis; 2)
aid the development of a higher-growth rate chassis; 3) assist the development of a nutrient optimized a
serum-free growth medium and; 4) assess, at genome scale, the metabolic
...
Snapshots: Snapshot 1, Snapshot 2, Snapshot 3
Validation of the core model of glycolysis, pyruvate metabolism and ATPase reaction using OE, KO mutant samples and perturbation samples
Person responsible: Niels Zondervan
Snapshots: No snapshots
Metabolic control analysis:
Local control coefficients for 40 independent samples based on 100x sampling from the measurement distribution
Global control analysis based on 100.000 Latin Hypercube sampling from the parameter search range (0.01-100 for Km values and 0.001-1000 for Vmax values)
Submitter: Niels Zondervan
Biological problem addressed: Model Analysis Type
Snapshots: No snapshots
