Dynamic model simmulation pipeline

The associated zip files contains all input files and a Jupyter notebook to rerun sampled simmulations, combined simmulations, parameter scan for the model with addition of an oxygin inhibiton of LDH, local- and global-sensitivity analysis and plot simmulation output in various formats. In addition the zip file contains the py36.yaml file that can be used to recreate the model simmulation environment using Anaconda making all simmulations completely reproducable. All information on how to use this file can be found in "Readme.txt".

SEEK ID: https://fairdomhub.org/assays/795

Modelling Analysis

Niels Zondervan

Projects: MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum anima...

Investigation: Modelling of M. pneumoniae metabolism

Study: Core Model predictions

Biological problem addressed: Model Analysis Type

Organisms: No organisms

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Created: 10th Jan 2019 at 13:44

Last updated: 20th Nov 2019 at 00:19

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