Studies

What is a Study?

14 Studies visible to you, out of a total of 56

protein per cell for HepG2 cells

IMOMESIC

No description specified

Submitter: Jurgen Haanstra

Investigation: Metabolism of HepG2 liver cancer cells

Assays: Cell counts and BCA Protein

Snapshots: No snapshots

Created: 10th Mar 2020 at 12:39, Last updated: 10th Mar 2020 at 12:51

Measurements of metabolism of HepG2 cells at 0 mM, 6 mM or 22 mM external glucose

IMOMESIC

No description specified

Submitter: Jurgen Haanstra

Investigation: Metabolism of HepG2 liver cancer cells

Assays: Cell counts and metabolite levels

Snapshots: No snapshots

Created: 6th Mar 2020 at 08:57, Last updated: 9th Mar 2020 at 08:47

Inhibition with Sulfasalazine (SSZ)

IMOMESIC

No description specified

Submitter: Jurgen Haanstra

Investigation: Metabolism of HepG2 liver cancer cells

Assays: Inhibition experiment for the effect of SSZ on HepG2 metabolism

Snapshots: No snapshots

Created: 6th Mar 2020 at 09:13, Last updated: 9th Mar 2020 at 08:47

Biofilms on chalcopyrite grains

SysMetEx

No description specified

Submitter: Malte Herold

Investigation: SysMetEx - Dataset collection

Assays: Microscopy imaging, Proteomics rawdata, RNAseq rawdata

Snapshots: No snapshots

Created: 6th May 2019 at 14:59, Last updated: 23rd Jan 2020 at 12:14

Planktonic cells

SysMetEx

No description specified

Submitter: Malte Herold

Investigation: SysMetEx - Dataset collection

Assays: Proteomics rawdata, RNAseq rawdata

Snapshots: No snapshots

Created: 6th May 2019 at 14:59, Last updated: 23rd Jan 2020 at 12:14

Continuous cultures

SysMetEx

No description specified

Submitter: Malte Herold

Investigation: SysMetEx - Dataset collection

Assays: Proteomics rawdata, RNAseq rawdata

Snapshots: No snapshots

Created: 6th May 2019 at 15:00, Last updated: 23rd Jan 2020 at 12:14

Supplemental Files

SysMetEx

Supplemental files for the publication of the dataset collection.

Submitter: Malte Herold

Investigation: SysMetEx - Dataset collection

Assays: Links to code repositories, Supplemental Files

Snapshots: No snapshots

Created: 23rd Jan 2020 at 11:01, Last updated: 23rd Jan 2020 at 12:14

Supplementary files

SysMetEx

Proteomics and transcriptomics data tables, sample IDs and description, source code

Submitter: Malte Herold

Investigation: Reverse Engineering Directed Gene Regulatory Ne...

Assays: Proteome data, RNA data, Simulations for network engineering

Snapshots: No snapshots

Created: 15th Apr 2019 at 06:06, Last updated: 17th Apr 2019 at 15:49

Deep Neural Networks Outperform Human Expert’s Capacity in Characterizing Bioleaching Bacterial Biofilm Composition

SysMetEx

edit later

Submitter: Malte Herold

Investigation: Deep Neural Networks Outperform Human Expert’s ...

Assays: Code for image analysis, Imaging of leaching cultures

Snapshots: No snapshots

Created: 26th Feb 2019 at 12:42, Last updated: 14th Mar 2019 at 11:11

Deep Neural Networks Outperform Human Expert’s Capacity in Characterizing Bioleaching Bacterial Biofilm Composition

SysMetEx

Publication data made available for Biotechnology Reports, supplementary data

Submitter: Antoine Buetti-Dinh

Investigation: Deep Neural Networks Outperform Human Expert’s ...

Assays: No Assays

Snapshots: No snapshots

Created: 26th Feb 2019 at 10:18, Last updated: 26th Feb 2019 at 10:19

Omics_data_analysis

SysMetEx

This stores: Processed data files Links to raw data files Links to repositories containing applied workflows

Submitter: Malte Herold

Investigation: Multi -omics reveal lifestyle of acidophile, mi...

Assays: Experimental methods, Genomics, Proteomics, RNAseq

Snapshots: No snapshots

Created: 19th Jul 2017 at 23:36, Last updated: 7th Nov 2017 at 13:47

Use of s-core/ s-core+ analysis to conduct a comparative gene co-expression network study

WineSys

s-core/ s-core+ network peeling is a methodology to identify cores of weighted complex networks.

Submitter: Eivind Almaas

Investigation: Development of methods for comparing gene co-ex...

Assays: Application of developed network methodology on human and mouse data.

Snapshots: No snapshots

Created: 26th Oct 2017 at 07:51, Last updated: 26th Oct 2017 at 09:16

ScoCyc metabolic pathway curation

STREAM, SYSTERACT

No description specified

Submitter: Jay Moore

Investigation: Metabolism of Streptomyces coelicolor (SysMO ST...

Assays: Metabolic pathway curation

Snapshots: No snapshots

Created: 4th Nov 2010 at 14:30, Last updated: 2nd Nov 2016 at 08:38

Timeseries 1

STREAM, SYSTERACT

(Show All)

Genotype: Wildtype (M145E) Medium: Phosphate-limited (F134)

Submitter: Jay Moore

Investigation: Metabolism of Streptomyces coelicolor (SysMO ST...

Assays: Online/offline measurements, metabolomics, proteomics, transcriptomics

Snapshots: No snapshots

Created: 26th May 2010 at 13:47, Last updated: 2nd Nov 2016 at 08:38

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