Proteomics data for L.ferriphilum samples (continuous and with mineral)
SEEK ID: https://fairdomhub.org/assays/547
Experimental assay
Projects: SysMetEx
Investigation: Multi -omics reveal lifestyle of acidophile, mineral-oxidizing model species Leptospirillum ferriphilumT
Study: Omics_data_analysis
Assay position:
Assay type: Experimental Assay Type
Technology type: Technology Type
Organisms: No organisms
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Created: 19th Jul 2017 at 23:59
Last updated: 8th Nov 2017 at 14:21
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Projects: SysMetEx
Institutions: University of Luxembourg
The main objective of the ERANET proposal Systems Biology Applications - ERASysAPP (app = application = translational systems biology) is to promote multidimensional and complementary European systems biology projects, programmes and research initiatives on a number of selected research topics. Inter alia, ERASysAPP will initiate, execute and monitor a number of joint transnational calls on systems biology research projects with a particular focus on applications - or in other words so called ...
Projects: SysVirDrug, SysMilk, SysMetEx, MetApp, IMOMESIC, WineSys, CropClock, SYSTERACT, XyloCut, RootBook, ROBUSTYEAST, LEANPROT, ErasysApp Funders
Web page: https://www.cobiotech.eu/about-cobiotech/erasysapp
Biomining is a biotechnological process carried out in many parts of the world that exploits acid loving microorganisms to extract metals from sulphide minerals. One industrial biomining method is called ‘heap bioleaching’ where typically copper containing minerals are piled into very large heaps, acid and microorganisms are added to the top and the soluble metal is collected at the heap base.
The role of the different types of microbes in the process is to speed up metal solubilisation by oxidising ...
Programme: ERASysAPP
Public web page: http://sysmetex.eu/index.html
Experimental data and all related material for the publication "Multi -omics reveal lifestyle of acidophile, mineral-oxidizing model species Leptospirillum ferriphilumT".
Submitter: Malte Herold
Studies: Omics_data_analysis
Assays: Experimental methods, Genomics, Proteomics, RNAseq
Snapshots: Snapshot 1
This stores: Processed data files Links to raw data files Links to repositories containing applied workflows
Submitter: Malte Herold
Investigation: Multi -omics reveal lifestyle of acidophile, mi...
Assays: Experimental methods, Genomics, Proteomics, RNAseq
Snapshots: No snapshots
Filtering of data in Perseus and t-test between conditions Perseus save file
Investigations: Multi -omics reveal lifestyle of acidophile, mi...
Studies: Omics_data_analysis
Assays: Proteomics
Maxquant output.
Proteomics data comparing LXX cultures cultivated on mineral and in continuous culture: mineral samples: LNU-LXX9-Si00-14B-P-B-Pr LNU-LXX9-Si00-14B-P-C-Pr LNU-LXX9-Si00-14B-P-D-Pr conitnuous culture samples: LNU-LXX9-Si00-CnA-P-B2-Pr LNU-LXX9-Si00-CnA-P-B3-Pr LNU-LXX9-Si00-CnA-P-B4-Pr LNU-LXX9-Si00-CnA-P-B5-Pr LNU-LXX9-Si00-CnA-P-B6-Pr LNU-LXX9-Si00-CnA-P-B7-Pr
Investigations: Multi -omics reveal lifestyle of acidophile, mi...
Studies: Omics_data_analysis
Assays: Proteomics
Investigations: Multi -omics reveal lifestyle of acidophile, mi...
Studies: Omics_data_analysis
Assays: Proteomics
Investigations: Multi -omics reveal lifestyle of acidophile, mi...
Studies: Omics_data_analysis
Assays: Proteomics
Investigations: Multi -omics reveal lifestyle of acidophile, mi...
Studies: Omics_data_analysis
Assays: Proteomics
Investigations: Multi -omics reveal lifestyle of acidophile, mi...
Studies: Omics_data_analysis
Assays: Proteomics
LFQ intensities from maxquant from combined search (mineral and continuous samples), filtered (at least 3 values in each condition), log-transformed
Creators: Malte Herold, Ansgar Poetsch, Mohamed El Hajjami, Ansgar
Submitter: Malte Herold
Relationship type: Not specified
Investigations: Multi -omics reveal lifestyle of acidophile, mi...
Studies: Omics_data_analysis
Assays: Proteomics
LFQ intensities from maxquant from combined search (mineral and continuous samples), log-transformed
Creators: Malte Herold, Ansgar Poetsch, Mohamed El Hajjami
Submitter: Malte Herold
Relationship type: Not specified
Investigations: Multi -omics reveal lifestyle of acidophile, mi...
Studies: Omics_data_analysis
Assays: Proteomics
Table combining data for L.ferriphilum. RNAseq data, Proteomics LFQs, Functional annotation
Creator: Malte Herold
Submitter: Malte Herold
DOI: 10.15490/fairdomhub.1.datafile.1807.5
Relationship type: Not specified
Investigations: Multi -omics reveal lifestyle of acidophile, mi...
Studies: Omics_data_analysis
Assays: Genomics, Proteomics, RNAseq
Comparison for LFQs with t-test in Perseus
Investigations: Multi -omics reveal lifestyle of acidophile, mi...
Studies: Omics_data_analysis
Assays: Proteomics
Repository for omics data analysis
Investigations: Multi -omics reveal lifestyle of acidophile, mi...
Studies: Omics_data_analysis
Assays: Proteomics, RNAseq