- Home
- Assays Index
- Genomics
Genomics data, for L.ferriphilum
Sequencing of the genome and functional annotation
FAIRDOMHub ID: https://fairdomhub.org/assays/548
Experimental Assay
Projects: SysMetEx
Investigation: Multi -omics reveal lifestyle of acidophile, mineral-oxidizing model species Leptospirillum ferriphilumT
Study: Omics_data_analysis
Assay type: Experimental Assay Type
Technology type: Technology Type
Organisms: No organisms

Views: 160
Created: 20th Jul 2017 at 02:04
Last updated: 8th Nov 2017 at 15:21
Related items
Projects: SysMetEx
Institutions: University of Luxembourg
Disciplines: Not specified
Roles: Not specified
Expertise: Not specified
Tools: Not specified
Biomining is a biotechnological process carried out in many parts of the world that exploits acid loving microorganisms to extract metals from sulphide minerals. One industrial biomining method is called ‘heap bioleaching’ where typically copper containing minerals are piled into very large heaps, acid and microorganisms are added to the top and the soluble metal is collected at the heap base.
The role of the different types of microbes in the process is to speed up metal solubilisation by oxidising
...
Programme: ERASysAPP
Public web page: http://sysmetex.eu/index.html
Experimental data and all related material for the publication "Multi -omics reveal lifestyle of acidophile, mineral-oxidizing model species Leptospirillum ferriphilumT".
Snapshots: Snapshot 1
Studies: Omics_data_analysis
Assays: Experimental methods, Genomics, Proteomics, RNAseq
This stores:
Processed data files
Links to raw data files
Links to repositories containing applied workflows
Person responsible: Malte Herold
Snapshots: No snapshots
Investigation: Multi -omics reveal lifestyle of acidophile, mi...
Assays: Experimental methods, Genomics, Proteomics, RNAseq
Raw data and assembly for pacbio sequencing of L.ferriphilum.
Investigations: Multi -omics reveal lifestyle of acidophile, mi...
Studies: Omics_data_analysis
Assays: Genomics
Genbank file for the L.ferriphilum chromosome, annotated with prokka 1.12beta
Investigations: Multi -omics reveal lifestyle of acidophile, mi...
Studies: Omics_data_analysis
Assays: Genomics
Link to the repository for functional annotation
Investigations: Multi -omics reveal lifestyle of acidophile, mi...
Studies: Omics_data_analysis
Assays: Genomics
Table combining data for L.ferriphilum.
RNAseq data, Proteomics LFQs, Functional annotation
Investigations: Multi -omics reveal lifestyle of acidophile, mi...
Studies: Omics_data_analysis
Assays: Genomics, Proteomics, RNAseq