Genomics data, for L.ferriphilum Sequencing of the genome and functional annotation
SEEK ID: https://fairdomhub.org/assays/548
Experimental assay
Projects: SysMetEx
Investigation: Multi -omics reveal lifestyle of acidophile, mineral-oxidizing model species Leptospirillum ferriphilumT
Study: Omics_data_analysis
Assay position:
Assay type: Experimental Assay Type
Technology type: Technology Type
Organisms: No organisms
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Created: 20th Jul 2017 at 00:04
Last updated: 8th Nov 2017 at 14:21
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Projects: SysMetEx
Institutions: University of Luxembourg
The main objective of the ERANET proposal Systems Biology Applications - ERASysAPP (app = application = translational systems biology) is to promote multidimensional and complementary European systems biology projects, programmes and research initiatives on a number of selected research topics. Inter alia, ERASysAPP will initiate, execute and monitor a number of joint transnational calls on systems biology research projects with a particular focus on applications - or in other words so called ...
Projects: SysVirDrug, SysMilk, SysMetEx, MetApp, IMOMESIC, WineSys, CropClock, SYSTERACT, XyloCut, RootBook, ROBUSTYEAST, LEANPROT, ErasysApp Funders
Web page: https://www.cobiotech.eu/about-cobiotech/erasysapp
Biomining is a biotechnological process carried out in many parts of the world that exploits acid loving microorganisms to extract metals from sulphide minerals. One industrial biomining method is called ‘heap bioleaching’ where typically copper containing minerals are piled into very large heaps, acid and microorganisms are added to the top and the soluble metal is collected at the heap base.
The role of the different types of microbes in the process is to speed up metal solubilisation by oxidising ...
Programme: ERASysAPP
Public web page: http://sysmetex.eu/index.html
Experimental data and all related material for the publication "Multi -omics reveal lifestyle of acidophile, mineral-oxidizing model species Leptospirillum ferriphilumT".
Submitter: Malte Herold
Studies: Omics_data_analysis
Assays: Experimental methods, Genomics, Proteomics, RNAseq
Snapshots: Snapshot 1
This stores: Processed data files Links to raw data files Links to repositories containing applied workflows
Submitter: Malte Herold
Investigation: Multi -omics reveal lifestyle of acidophile, mi...
Assays: Experimental methods, Genomics, Proteomics, RNAseq
Snapshots: No snapshots
Raw data and assembly for pacbio sequencing of L.ferriphilum.
Investigations: Multi -omics reveal lifestyle of acidophile, mi...
Studies: Omics_data_analysis
Assays: Genomics
Link to the repository for functional annotation
Investigations: Multi -omics reveal lifestyle of acidophile, mi...
Studies: Omics_data_analysis
Assays: Genomics
Genbank file for the L.ferriphilum chromosome, annotated with prokka 1.12beta
Investigations: Multi -omics reveal lifestyle of acidophile, mi...
Studies: Omics_data_analysis
Assays: Genomics
Table combining data for L.ferriphilum. RNAseq data, Proteomics LFQs, Functional annotation
Creator: Malte Herold
Submitter: Malte Herold
DOI: 10.15490/fairdomhub.1.datafile.1807.5
Relationship type: Not specified
Investigations: Multi -omics reveal lifestyle of acidophile, mi...
Studies: Omics_data_analysis
Assays: Genomics, Proteomics, RNAseq