Assays

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Validation by simulating independent mutant and perturbation samples

MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum animal vaccine

Validation by simulating independent OE, KO mutant and perturbation samples, using sampling of the gausian distribution based on the mean and SD of measurements per sample. A 1000 samples of the gausian distribution of the mean and SD was performed per sample to show error in the measurements and how it propegates in predicted metabolite concentration in SS

Submitter: Niels Zondervan

Biological problem addressed: Model Analysis Type

Investigation: Modelling of M. pneumoniae metabolism

Study: Core Model predictions

Organisms: No organisms

Models: Dynamic model of glycolysis, pyruvate metabolis...

SOPs: No SOPs

Data files: 40 samples internal metabolite concentrations F..., Comparison of model SS metabolite concentration..., Dynamic modelling pipeline, Internal metabolite concentraitons for mutants,..., Symmetric mean absolute percentage error per sa...

Snapshots: No snapshots

Created: 19th Apr 2017 at 08:02, Last updated: 20th Nov 2019 at 23:19

VFT and Arrhenius Modelling

CML for thermophysical properties of mixtures

(Show All)

No description specified

Submitter: Gudrun Gygli

Biological problem addressed: Model Analysis Type

Investigation: Deep Eutectic Solvents

Study: Meta-analysis of viscosity of aqueous deep eute...

Organisms: No organisms

Models: No Models

SOPs: Instructions for using the workflow

Data files: Defining names, Modelling Workflow, Results of modelling analysis, Viscosity data input, Wrapper script

Snapshots: No snapshots

Created: 10th Jul 2020 at 13:19, Last updated: 24th Jul 2020 at 13:53

Vitellogenin in blood plasma

Systems toxicology of Atlantic cod

Biosense Vtg assay measuring concentrations of vitellogenin in cod blood plasma

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Caging study - Kollevåg

Organisms: Gadus morhua

SOPs: No SOPs

Data files: Kollevåg biometrics, Vitellogenin_plasma_Kollevåg

Snapshots: No snapshots

Created: 27th Nov 2018 at 08:50, Last updated: 27th Nov 2018 at 10:20

Vitellogenin in plasma

Systems toxicology of Atlantic cod

Concentration of the egg yolk precursor protein vitellogenin in cod plasma

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: PAH/PFAS mixture toxicity in vivo

Organisms: Gadus morhua

SOPs: No SOPs

Data files: In vivo-1 biometrics, Vitellogenin concentrations in cod plasma - IV1

Snapshots: No snapshots

Created: 27th Mar 2019 at 08:52, Last updated: 3rd Jul 2020 at 08:08

Volume

TRANSLUCENT

What is the relationship between the activity of Trk1,2 system and cell volume? Is cell volume affected by lack of the main potassium uptake systems? Comparison of cell volume in wild type and TRK mutants.

Submitter: Falko Krause

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: TRK1,2 Transport Systems of Saccharomyces cerev...

Study: Key Cell-Physiological Parameters of TRK1,2 Tr...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 3rd Jun 2010 at 10:48, Last updated: 8th Nov 2017 at 14:21

Volume determination during starvation at different times.

TRANSLUCENT

Is cell volume affected by potassium starvation?

The volume reduction as a response to the shift of cells from a medium of high potassium to potassium free medium will be studied in mutants lacking certain membrane transporters like Trk1,2 Nha1, etc. The conditions for the experiments follow Navarrete et al. (2010). Additionally knockouts of related regulation proteins (SAP155, SAP185) will be tested. For each mutant several time points will be measured to generate time courses.

Submitter: Falko Krause

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: K+ Starvation in Saccharomyces cerevisiae

Study: Key Cell-Physiological Parameters

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 3rd Jun 2010 at 10:17, Last updated: 8th Nov 2017 at 14:21

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