# Biological problem addressed 'Metabolic Network'

## Related assays

**13**Assays visible to you, out of a total of

**21**

**Submitter**: Jay Moore

**Biological problem addressed**: Metabolic Network

**Investigation:** Metabolism of Streptomyces coelicolor (SysMO ST...

Time-dependent simulations of the dynamic switch between acidogenesis and solventogenesis based on the metabolic network and pH-dependent regulation of the enzymes.

**Submitter**: Sara Jabbari

**Biological problem addressed**: Metabolic Network

**Investigation:** The effect of pH upon the metabolic shift in Cl...

The dynamic model describes response of yeast metabolic network on metabolic perturbation (i.e. glucose-pulse). One compartmental ODE-based model of yeast anaerobic metabolism includes: glycolysis, pentose phosphate reactions, purine de novo synthesis pathway, purine salvage reactions, redox reactions and biomass growth. The model describes metabolic perturbation of steady state growing cells in chemostat.

**Submitter**: Maksim Zakhartsev

**Biological problem addressed**: Metabolic Network

**Investigation:** Kinetic analysis of metabolic system using tran...

- Comparison of metabolic flux distribution in carbon core metabolism (EMP, PPP, TCA) of Bacillus subtilis under 3 different conditions: "salt-free" reference, "stress" chemostat, "osmoprotected" chemostat.
- Model created using OpenFLUX and Microsoft Excel
- Model computed using MatLAB

**Submitter**: Michael Kohlstedt

**Biological problem addressed**: Metabolic Network

**Investigation:** Multiomics study of Bacillus subtilis under osm...

Metabolic network of S. pyogenes including primary metabolism, polysaccharide metabolism, purine and pyrimidine biosoynthesis, teichoic acid biosynthesis, fatty acid and phospholipid bioynthesis, amino acid metabolism, vitamins and cofactors

**Submitter**: Jennifer Levering

**Biological problem addressed**: Metabolic Network

**Investigation:** Investigation of glycolysis and pyruvate branch...

Metabolic network of Enterococcus faecalis including primary metabolism, polysaccharide metabolism, purine and pyrimidine biosoynthesis, teichoic acid biosynthesis, fatty acid and phospholipid bioynthesis, amino acid metabolism, vitamins and cofactors

**Submitter**: Nadine Veith

**Biological problem addressed**: Metabolic Network

**Investigation:** Investigation of glycolysis and pyruvate branch...

The model describes the behaviour of E. coli in a stationary chemostat with different oxygen availability.

**Submitter**: Michael Ederer

**Biological problem addressed**: Metabolic Network

**Investigation:** Steady state studies for different oxygen avail...

In vitro reconstitution of the PGK, GAPHD, TPI and FBPAase enzymes from S. solfataricus

**Submitter**: Jacky Snoep

**Biological problem addressed**: Metabolic Network

**Investigation:** Central Carbon Metabolism of Sulfolobus solfata...

**Study:** Model Gluconeogenesis

Model prediction of the conversion of 3PG to fructose-6-phosphate and the gluconeogenic pathway intermediates. https://jjj.bio.vu.nl/models/experiments/kouril3_experiment-user/simulate

**Submitter**: Jacky Snoep

**Biological problem addressed**: Metabolic Network

**Investigation:** Central Carbon Metabolism of Sulfolobus solfata...

Genome scale metabolic model of Sulfolobus solfataricus specific scenario: modelling of L-fucose degradation pathways

**Submitter**: Jacqueline Wolf

**Biological problem addressed**: Metabolic Network

**Investigation:** L-fucose degradation in Sulfolobus solfataricus P2

The multi-compartmental metabolic network of Arabidopsis thaliana was reconstructed and optimized in order to explain growth stoichiometry of the plant both in light and in dark conditions. Balances and turnover of energy (ATP/ADP) and redox (NAD(P)H/NAD(P)) metabolites as well as proton in different compartments were estimated. The model showed that in light conditions, the plastid ATP balance depended on the relationship between fluxes through photorespiration and photosynthesis including both ...

**Submitter**: Maksim Zakhartsev

**Biological problem addressed**: Metabolic Network

**Investigation:** Metabolic analysis of effects of sucrose transl...

**Submitter**: Xiaokang Zhang

**Biological problem addressed**: Metabolic Network

**Investigation:** 1 hidden item

**Study:** 1 hidden item

All flux balance analyses of the stoichiometric model

**Submitter**: Julia Koblitz

**Biological problem addressed**: Modelling analysis

**Investigation:** Systems biology investigation of aromatic compo...

**Study:** Metabolic Modelling