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349 Assays visible to you, out of a total of 372

100414H1

BioDare1

100414H1

Property	Value
BioDare ID	13982674508951
Author	Yvette Wilson
Institution
License

Description

At ZT0 dawn is dim light (6umolm-2s-1) for 6 hours. At ZT6 light steps up to 90 umolm-2s-2. Dusk is lights off at ZT 12. Double dawn cycle is for 4 days then continuous light for 3 days. ie 12L:12D x4 LLx3.

Purpose

Double dawn experiment to compare to Mark Stitt's results

Comments

Pedro is not able to record changes in ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet double dawns

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 100414H1_LOG.xlsx, 100414H1_metamorph.3.xlsx, BioDare_metadata.json, Individual results.csv, Readme.md, SCRIPT.CSV, SCRIPT01.CSV, SCRIPT02.csv, SCRIPT03.CSV, STANDARD_DATAFILE.2.txt, STANDARD_RAWDATAFILE.2.txt, Sample_list.csv, Statistics 22859.csv, Statistics 4186.csv, Statistics 4187.csv, Statistics 4188.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:26, Last updated: 8th Sep 2026 at 15:24

100414H2

BioDare1

100414H2

Property	Value
BioDare ID	13983251032563
Author	Yvette Wilson
Institution
License

Description

12L:12D x4 LLx3. Light intensity is 90 umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)

Partner experiment: 100414H1

Purpose

Double dawn experiment to compare to Mark Stitt's results

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet double dawns

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 100414H2_LOG.xls, 100414H2_metamorph.2.xlsx, BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.1.txt, Sample_list.csv, Statistics 4189.csv, Statistics 4190.csv, Statistics 4191.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:24, Last updated: 8th Sep 2026 at 15:22

130313H1: 14L14D x 4 LL x 3 (T-28)

BioDare1

130313H1: 14L14D x 4 LL x 3 (T-28)

Property	Value
BioDare ID	13637871113032
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 14L 14D Experimental conditions: 14L14Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

Wrong imaging script was used (90mins) for T-28. 5mins, 10mins and 10mins of L was cut out ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 130313H1.rgn, 130313H1_IMG_14L14D.csv, 130313H3.csv, BioDare_metadata.json, Individual results.csv, RAW_200313H1.1.xlsx, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.1.txt, Sample_list.csv, Statistics 2459.csv, Statistics 2460.csv, Statistics 2461.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:18, Last updated: 8th Sep 2026 at 15:21

200213H1: 15L5D x4 LL x3 (T-20)

BioDare1

200213H1: 15L5D x4 LL x3 (T-20)

Property	Value
BioDare ID	13618962781900
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 15L 5D Experimental conditions: 15L 5Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle.

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 200213H1_15L5D.csv, 200213H1_IMG_15L5D.csv, BioDare_metadata.json, Individual results.csv, RAW 200213H1.2.xlsx, Readme.md, STANDARD_DATAFILE.2.txt, STANDARD_RAWDATAFILE.2.txt, Sample_list.csv, Statistics 2715.csv, Statistics 2716.csv, Statistics 2717.csv, Statistics 2718.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:12, Last updated: 8th Sep 2026 at 15:19

270213H1: 10L10Dx4 LLx3 (T-20)

BioDare1

270213H1: 10L10Dx4 LLx3 (T-20)

Property	Value
BioDare ID	13624982192162
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 5L 15D Experimental conditions: 5L15Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 270213H1_10L10D.csv, 270213H1_IMG_10L10D.csv, BioDare_metadata.json, Individual results.csv, RAW 270213H1.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, Statistics 3223.csv, Statistics 3224.csv, Statistics 3225.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:06, Last updated: 8th Sep 2026 at 15:18

130212H1: 5L15Dx4 LLx3 (T-20)

BioDare1

130212H1: 5L15Dx4 LLx3 (T-20)

Property	Value
BioDare ID	13615471409903
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 5L 15D Experimental conditions: 5L15Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

1.) 2H of L were cut short at the end of the first day of experimental condition (3L17D). 2.) ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 130213H1.rgn, 130213H1_entrainment_5L15D.csv, 5L15D_IMG_130213.csv, BioDare_metadata.json, Individual results.csv, RAW 130213H1.3.xlsx, Readme.md, STANDARD_DATAFILE.3.txt, STANDARD_RAWDATAFILE.3.txt, Sample_list.csv, Statistics 1607.csv, Statistics 1608.csv, Statistics 1609.csv, Statistics 1610.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:03, Last updated: 8th Sep 2026 at 15:16

060313H1: 5L15Dx4 LLx3 (T-20)

BioDare1

060313H1: 5L15Dx4 LLx3 (T-20)

Property	Value
BioDare ID	13631017726171
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 5L 15D Experimental conditions: 5L15Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 060313H1.rgn, 060313H1_5L15D.csv, 060313H1_IMG_5L15D.csv, BioDare_metadata.json, Individual results.csv, RAW_060313H1.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, Statistics 3217.csv, Statistics 3218.csv, Statistics 3219.csv, Statistics 7503.csv, Statistics 7504.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:00, Last updated: 8th Sep 2026 at 15:15

130313H2: 12F-12Dx4 FFx3

BioDare1

130313H2: 12F-12Dx4 FFx3

Property	Value
BioDare ID	13639713266200
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Far-Red)

Purpose

Test how the phytochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 130313H2.rgn, 130313H2_12L12D_x4_LLx3_Far-red.csv, BioDare_metadata.json, Individual results.csv, Raw Data.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, Statistics 3589.csv, Statistics 3590.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:57, Last updated: 8th Sep 2026 at 15:13

060313H2: 12F-12Dx4 FFx3

BioDare1

060313H2: 12F-12Dx4 FFx3

Property	Value
BioDare ID	13631095320942
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Far-Red)

Purpose

Test how the phytochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 060313H2 Raw Data.xlsx, 060313H2.rgn, 060313H3_12L12D_x4_LLx3_Far-red.csv, BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, Statistics 1879.csv, Statistics 1880.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:55, Last updated: 8th Sep 2026 at 15:12

200213H3: 12B-12Dx4 BB3

BioDare1

200213H3: 12B-12Dx4 BB3

Property	Value
BioDare ID	13619780272531
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Blue)

Purpose

Test how the cryptochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 200213H3 Raw Data.1.xlsx, 200213H3.rgn, 200213H3_12L12D_x4_LLx3_Blue.csv, BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.1.txt, Sample_list.csv, Statistics 1894.csv, Statistics 1895.csv, Statistics 1896.csv, Statistics 1897.csv, Statistics 1898.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:42, Last updated: 8th Sep 2026 at 15:11

130213H3: 12R-12Dx4 RRx3

BioDare1

130213H3: 12R-12Dx4 RRx3

Property	Value
BioDare ID	13618784212904
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Red)

Purpose

Test how the phytochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 130213H3 Raw Data corr.xlsx, 130213H3.rgn, 130213H3_12L12D_x4_LLx3_Red.csv, BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.2.txt, STANDARD_RAWDATAFILE.2.txt, Sample_list.csv, Statistics 7486.csv, Statistics 7487.csv, Statistics 7488.csv, Statistics 7489.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:40, Last updated: 8th Sep 2026 at 15:08

270213H3: 12R-12Dx4 RRx3

BioDare1

270213H3: 12R-12Dx4 RRx3

Property	Value
BioDare ID	13630953803730
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Red)

Purpose

Test how the phytochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 270213H3 Raw Data.xlsx, 270213H3.rgn, 270213H3_12L12D_x4_LLx3_Red.csv, BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, Statistics 2297.csv, Statistics 2298.csv, Statistics 2299.csv, Statistics 2300.csv, Statistics 2301.csv, Statistics 2302.csv, Statistics 2303.csv, Statistics 2304.csv, Statistics 2305.csv, Statistics 2306.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:37, Last updated: 8th Sep 2026 at 15:06

AT0080: 4x18:6-DD

BioDare1

AT0080: 4x18:6-DD

Property	Value
BioDare ID	12730527312073
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

LUC imaging 18L:6D into constant dark

Purpose

testing phase changes of clock components under different photoperiods

Comments

Pedro prepared by editing groups from previous template

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0080.1.xls, AT0080.rgn, AT0080.xls_imported, AT0080BrassDerandomized.xls, BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, Statistics 2957.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:34, Last updated: 8th Sep 2026 at 15:02

AT0043: 4x 12:12-DD

BioDare1

AT0043: 4x 12:12-DD

Property	Value
BioDare ID	12730739255199
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

LUC imaging 12:12 blue+red into constant darkness

Purpose

testing acute light responses at dawn and dusk

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0043.2.xls, AT0043.rgn, AT0043.xls, AT0043.xls_imported, AT0043BRASSDerandomized.xls, BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, Statistics 229.csv, Statistics 230.csv, Statistics 3286.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:28, Last updated: 8th Sep 2026 at 15:01

AT0078: 4x6:18-DD

BioDare1

AT0078: 4x6:18-DD

Property	Value
BioDare ID	12729899933214
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

LUC imaging 6L:18D into constant dark

Purpose

testing phase changes of clock components under different photoperiods

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0078.1.xls, AT0078.rgn, AT0078.xls_imported, AT0078BrassDerandomized.xls, BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, Statistics 1708.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:24, Last updated: 8th Sep 2026 at 15:00

Effects of GA on clock in WT and prr9prr7

BioDare1

Effects of GA on clock in WT and prr9prr7

Property	Value
BioDare ID	3838
Author	Daniel Seaton
Institution	University of Edinburgh
License	CC_BY

Description

Purpose

To test whether GA has any effect on circadian clock period in the WT, and whether this effect is altered in the prr9prr7 mutant.

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Chew Yin Hoon

Study: Chew et al. (2022)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 300915_Ham2_GA_p97_experiment.csv, BioDare_metadata.json, Individual results.csv, Readme.md, Sample_list.csv, Statistics 7511.csv, metamorph_output_abridged.2.xlsx

Snapshots: No snapshots

Created: 18th Jun 2026 at 12:50, Last updated: 8th Sep 2026 at 14:59

Kim et al. (2005); CO, FT; 16L:8D; WT, elf3

BioDare1

Kim et al. (2005); CO, FT; 16L:8D; WT, elf3

Property	Value
BioDare ID	13790787578160
Author	Kim, W.Y.
Institution	Ohio State University
License	CC_BY

Description

Purpose

The circadian clock regulates many aspects of plant development, including hypocotyl elongation and photoperiodic induction of flowering. ZEITLUPE (ZTL) is a clock-related F-box protein, and altered ZTL expression causes fluence rate-dependent circadian ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Kim, W.Y.

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, kim2005.pdf, kim2005.xls

Snapshots: No snapshots

Created: 19th Jun 2026 at 15:39, Last updated: 23rd Jul 2026 at 13:13

Kim2007 ZTL in blue light

BioDare1

Kim2007 ZTL in blue light

Property	Value
BioDare ID	13228247820844
Author	Kim WY
Institution	Ohio State University
License	CC_BY

Description

Purpose

time courses of TOC1, GI and ZTL proteins in 12:12

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Kim, W.Y.

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Kim2007_wt_LD_TOC1_GI_ZTL_proteins.xls, Kim_Nature07.pdf, Kim_Nature07_suppl_tex.pdf, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 15:42, Last updated: 23rd Jul 2026 at 13:13

Ito 2007 wt LD PRR9 protein

BioDare1

Ito 2007 wt LD PRR9 protein

Property	Value
BioDare ID	13227547204752
Author	Ito S
Institution	Nagoya University
License	CC_BY

Description

Purpose

PRR9 mRNA and protein were measured under the same conditions. This file has PRR9 protein only.

Comments

This PRR9 protein profile rises more slowly than the FLAG-tagged PRR9 protein in Nakamichi Plant Cell 2010.

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Ito, S.

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Ito PRR9 PCP 07.pdf, Ito2007_wt_LD_PRR9_protein.xls, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 15:35, Last updated: 23rd Jul 2026 at 13:13

Sawa et al. (2007); CO; 16L:8D; WT, gi

BioDare1

Sawa et al. (2007); CO; 16L:8D; WT, gi

Property	Value
BioDare ID	13790763084422
Author	Sawa, M.
Institution	Scripps Research Institute
License	CC_BY

Description

Purpose

Precise timing of CONSTANS (CO) gene expression is necessary for day-length discrimination for photoperiodic flowering. The FLAVIN-BINDING, KELCH REPEAT, F-BOX 1 (FKF1), and GIGANTEA (GI) proteins regulate CO transcription in Arabidopsis. We demonstrate ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Sawa, M.

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, sawa2007.pdf, sawa2007.xls

Snapshots: No snapshots

Created: 19th Jun 2026 at 15:37, Last updated: 23rd Jul 2026 at 13:13

Ito et al. (2008); GI, FKF1, CDF1, CO, FT; 16L:8D, 10L:14D; WT, toc1, prr5, toc1;prr5

BioDare1

Ito et al. (2008); GI, FKF1, CDF1, CO, FT; 16L:8D, 10L:14D; WT, toc1, prr5, toc1;prr5

Property	Value
BioDare ID	13790751359110
Author	Ito, S.
Institution	Nagoya University
License	CC_BY

Description

Purpose

In Arabidopsis thaliana, many circadian clock-associated genes have been identified. Among them, the eveningexpressed TOC1 (TIMING OF CAB EXPRESSION 1) gene plays a role by forming a transcriptional feedback core loop ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Ito, S.

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, ito2008.pdf, ito2008.xls

Snapshots: No snapshots

Created: 19th Jun 2026 at 15:10, Last updated: 23rd Jul 2026 at 13:13

Niwa et al. (2007); GI, FKF1, CDF1, CO, FT mRNA; 10L:14D; WT, cca1;lhy, toc1;cca1;lhy

BioDare1

Niwa et al. (2007); GI, FKF1, CDF1, CO, FT mRNA; 10L:14D; WT, cca1;lhy, toc1;cca1;lhy

Property	Value
BioDare ID	13790739219191
Author	Niwa Y.
Institution	Nagoya University
License	CC_BY

Description

Purpose

In Arabidopsis thaliana, the flowering time is regulated through the circadian clock that measures day-length and modulates the photoperiodic CO–FT output pathway in accordance with the external coincidence model. ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Niwa Y.

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, niwa2007.pdf, niwa2007.xls

Snapshots: No snapshots

Created: 19th Jun 2026 at 15:07, Last updated: 23rd Jul 2026 at 13:13

Nakamichi et al. (2007); FKF1, CDF1, CO, FT; 16L:8D, 10L:14D; WT, prr7;5, prr9;7, cca1;lhy, cca1;lhy;prr7;5

BioDare1

Nakamichi et al. (2007); FKF1, CDF1, CO, FT; 16L:8D, 10L:14D; WT, prr7;5, prr9;7, cca1;lhy, cca1;lhy;prr7;5

Property	Value
BioDare ID	13790777856363
Author	Nakamichi, N.
Institution	Nagoya University
License	CC_BY

Description

Purpose

Photoperiodism allows organisms to measure daylength, or external photoperiod, and to anticipate coming seasons. Daylength measurement requires the integration of light signal and temporal ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Nakamichi Norihito

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, nakamichi2007.pdf, nakamichi2007.xls

Snapshots: No snapshots

Created: 19th Jun 2026 at 15:02, Last updated: 23rd Jul 2026 at 13:13

Matsushika2000_wt_LD_PRR975_mRNA

BioDare1

Matsushika2000_wt_LD_PRR975_mRNA

Property	Value
BioDare ID	13228202468812
Author	Matsushika A
Institution	Nagoya University
License	CC_BY

Description

Purpose

typical time course of PRR9, PRR7, PRR5 in 12:12

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Matsushika A

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Matsushika2000_wt_LD_PRR975_mRNA.xls, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.1.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 14:34, Last updated: 23rd Jul 2026 at 13:13

Nakamichi_2010_draft: PRR9,PRR7,PRR5

BioDare1

Nakamichi_2010_draft: PRR9,PRR7,PRR5

Property	Value
BioDare ID	13401436566946
Author	Norihito Nakamichi
Institution	RIKEN Plant Science Center
License	CC_BY

Description

Literature data from: 'PSEUDO-RESPONSE REGULATORS 9, 7, and 5 are transcriptional repressors in the Arabidopsis circadian clock.' by: Norihito Nakamichi.

An interlocking transcriptional-translational feedback loop of clock-associated genes is thought ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Nakamichi Norihito

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Nakamichi 2010 Fig5.jpg, Nakamichi Fig6.jpg, Nakamichi data for upload.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, nakamichi PRRs PC 10 all.pdf

Snapshots: No snapshots

Created: 19th Jun 2026 at 14:39, Last updated: 23rd Jul 2026 at 13:13

Song et al. (2012); WT, fkf1, COox, COox;fkf1 and COoxCDF1ox in SD and LD at 22oC.

BioDare1

Song et al. (2012); WT, fkf1, COox, COox;fkf1 and COoxCDF1ox in SD and LD at 22oC.

Property	Value
BioDare ID	13227587445347
Author	Song, Y.H.
Institution	University of Washington
License	CC_BY

Description

Literature data from: 'FKF1 conveys timing information for CONSTANS stabilization in photoperiodic flowering' by: Song, Y.H..

CDF1 and FKF1 have previously been shown to regulate CO mRNA. This data highlights that they ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Song, Y.H.

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, floweringdata.xls, song2012.pdf

Snapshots: No snapshots

Created: 19th Jun 2026 at 14:25, Last updated: 23rd Jul 2026 at 13:13

Song et al. (2012); WT, fkf1, COox, COox;fkf1 and COoxCDF1ox in SD and LD at 22oC.

BioDare1

Song et al. (2012); WT, fkf1, COox, COox;fkf1 and COoxCDF1ox in SD and LD at 22oC.

Property	Value
BioDare ID	13228237712731
Author	Song, Y.H.
Institution	University of Washington
License	CC_BY

Description

Literature data from: 'FKF1 conveys timing information for CONSTANS stabilization in photoperiodic flowering' by: Song, Y.H..

CDF1 and FKF1 have previously been shown to regulate CO mRNA. This data highlights that they ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Song, Y.H.

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, floweringdataprotein.xls, song2012.pdf

Snapshots: No snapshots

Created: 19th Jun 2026 at 14:27, Last updated: 23rd Jul 2026 at 13:13

The TIME FOR COFFEE Gene Maintains the Amplitude and Timing of Arabidopsis Circadian Clocks

BioDare1

The TIME FOR COFFEE Gene Maintains the Amplitude and Timing of Arabidopsis Circadian Clocks

Property	Value
BioDare ID	13227577822113
Author	Hall A
Institution	University of Edinburgh
License	CC_BY

Description

Literature data from: 'The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks' by: Hall A.

Plants synchronize developmental and metabolic processes with the earth’s 24-h rotation ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Hall A

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.1.txt, Sample_list.csv, hall2003.pdf, mbsamples2.xls

Snapshots: No snapshots

Created: 19th Jun 2026 at 14:23, Last updated: 23rd Jul 2026 at 13:13

Mizoguchi2002_wt_gi_LL_LHY_CCA1

BioDare1

Mizoguchi2002_wt_gi_LL_LHY_CCA1

Property	Value
BioDare ID	13228428214032
Author	Mizoguchi Tsuyoshi
Institution	John Innes Centre
License	CC_BY

Description

Literature data from: 'LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis' by: Mizoguchi Tsuyoshi.

comparison of wt and gi-3 (Ler) in LL

Purpose

LL time courses for LHY, CCA1 mRNA for wt, gi; soil

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Tsuyoshi Mizoguchi

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Mizoguchi2002_wt_gi_LL_LHY_CCA1.xls, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 14:19, Last updated: 23rd Jul 2026 at 13:13

FLOWERING LOCUS C Controls Temperature Response of the Arabidopsis Clock

BioDare1

FLOWERING LOCUS C Controls Temperature Response of the Arabidopsis Clock

Property	Value
BioDare ID	13227500410222
Author	Edwards KD
Institution	University of Edinburgh
License	CC_BY

Description

Literature data from: 'FLOWERING LOCUS C mediates natural variation in the high-temperature response of the Arabidopsis circadian clock' by: Edwards KD.

Authors have analyzed FLC alleles in near-isogenic lines and induced mutants ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Kieron D Edwards

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, mbsamples.xls

Snapshots: No snapshots

Created: 19th Jun 2026 at 14:21, Last updated: 23rd Jul 2026 at 13:13

Assays

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100414H1

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100414H2

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130313H1: 14L14D x 4 LL x 3 (T-28)

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200213H1: 15L5D x4 LL x3 (T-20)

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270213H1: 10L10Dx4 LLx3 (T-20)

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130212H1: 5L15Dx4 LLx3 (T-20)

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060313H1: 5L15Dx4 LLx3 (T-20)

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130313H2: 12F-12Dx4 FFx3

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060313H2: 12F-12Dx4 FFx3

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200213H3: 12B-12Dx4 BB3

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130213H3: 12R-12Dx4 RRx3

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270213H3: 12R-12Dx4 RRx3

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AT0080: 4x18:6-DD

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AT0043: 4x 12:12-DD

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AT0078: 4x6:18-DD

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Effects of GA on clock in WT and prr9prr7

Description

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Comments

Kim et al. (2005); CO, FT; 16L:8D; WT, elf3

Description

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Kim2007 ZTL in blue light

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Ito 2007 wt LD PRR9 protein

Description

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Sawa et al. (2007); CO; 16L:8D; WT, gi

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