Simile version of the Framework Model, PLM_76_ 1

Version 1

SynthSys is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE).

What is PlaSMo? PlaSMo stands for Plant Systems-biology Modelling Ensuring the achievements of yesterday's Mathematical Modellers will be available for the Systems Biologists of tomorrow.

Our aims

To identify plant mathematical models useful to the UK plant systems biology community, which are currently in a variety of legacy formats and in danger of being lost To represent these models in a declarative XML-based format, which is closer to the systems biology standard SBML To evaluate the behaviour ...

Collection of models submitted to PLaSMo by Yin Hoon and automatically transferred to FAIRDOM Hub.

This is the Framework Model (Chew et al, PNAS 2014; http://www.pnas.org/content/early/2014/08/27/1410238111) that links the following:

1. Arabidopsis leaf carbohydrate model (Rasse and Tocquin) - Carbon Dynamic Model

2. Part of the Christophe et al 2008 Functional-Structural Plant Model

3. Chew et al 2012 Photothermal Model

4. Salazar et al 2009 Photoperiodism Model

To run the model in Simile, please download the Evaluation Edition of the software from

http://www.simulistics.com/products/simile.php ...

This is the Framework Model (Chew et al, PNAS 2014; http://www.pnas.org/content/early/2014/08/27/1410238111) that links the following:

1. Arabidopsis leaf carbohydrate model (Rasse and Tocquin) - Carbon Dynamic Model

2. Part of the Christophe et al 2008 Functional-Structural Plant Model

3. Chew et al 2012 Photothermal Model

4. Salazar et al 2009 Photoperiodism Model

To run the model in Simile, please download the Evaluation Edition of the software from

http://www.simulistics.com/products/simile.php ...