Salazar Photoperiodism Model with T6P - PLM_82

	This is the SimileXML for the Salazar model linked to the T6P/TPS pathway (Wahl et al. Science 2013). The Simile version of this model and the parameter file are also attached here.			Time series data of T6P and <em>FT</em> mRNA for Col wild type and <em>tps1</em> mutant from Fig. 1 in Wahl et al were used to re-optimise Bco, KCO, kT6P and vT6P (which replaces VCO).			<strong>Note:</strong> This set of parameter values has only been optimised and tested for a 16:8 light:dark cycle, and the initial values in the Simile model are for 12:12. 			<strong>Instructions to run the model in Simile</strong>			1.       Save all the files into the same folder.			2.       Copy and paste the attached ‘lightfunction.pl’ file in the following folder:			           Program File > Simile6.0 (or other software version)> Functions			3.       Download the attached Simile file or import the XML into Simile:			           a.       File > Import > XML Model Description			4.       To run the model:			           a.       Model > Run or click on the ‘Play’ (triangle) button			5.       When you run the model for the first time, you will be prompted to load the parameter file. To do so:			          a.       Load the ‘Salazar model.spf’ file at the TOP LEVEL			6.       The time unit and time step also need to be adjusted as follows:			           a.       The time step can be set in the run display window. The time step #1 should be set to 0.001			           b.      The time unit should be changed to ‘hour’, which can be done in the ‘Run settings’ tab in the run display window<br><br><strong>Originally submitted to PLaSMo on 2014-03-18 13:27:16</strong>
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Yin Hoon

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Created: 10th Jan 2019 at 17:39

Last updated: 7th May 2019 at 13:24

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