Salazar_et_al_2009_Photoperiodism_Model - PLM_74, version 1

This is the SimileXML for the Salazar2009_FloweringPhotoperiod model in PlaSMo. It corresponds to Model 3 in the publication of Salazar et al 2009. The Simile version of this model is also attached here. Instructions to run the Photoperiodism Model in Simile 1.       Save all the files into the same folder. 2.       Copy and paste the attached ‘lightfunction.pl’ file in the following folder:            Program File > Simile6.0 (or other software version)> Functions 3.       Download the attached Simile file or import the XML into Simile:            a.       File > Import > XML Model Description 4.       To run the model:            a.       Model > Run or click on the ‘Play’ (triangle) button 5.       When you run the model for the first time, you will be prompted to load the parameter file. To do so:           a.       Load the ‘Salazar model.spf’ file at the TOP LEVEL 6.       The time unit and time step also need to be adjusted as follows:            a.       The time step can be set in the run display window. The time step #1 should be set to 0.001            b.      The time unit should be changed to ‘hour’, which can be done in the ‘Run settings’ tab in the run display window

Related Publications
Salazar JD, Saithong T, Brown PE, Foreman J, Locke JC, Halliday KJ, Carré IA, Rand DA, Millar AJ. (2009). Prediction of photoperiodic regulators from quantitative gene circuit models . Cell. Retrieved from: http://www.ncbi.nlm.nih.gov/pubmed/20005809

Originally submitted to PLaSMo on 2013-11-12 15:06:57

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Yin Hoon
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Created: 10th Jan 2019 at 17:41

Last updated: 7th May 2019 at 13:25

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