SEEK ID: https://fairdomhub.org/sops/144?version=1
Filename: SOP - STREAM.1.17-1 - Metabolome - MCF derivatization.doc
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Created: 4th Nov 2010 at 14:08
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Version 1 (earliest) Created 4th Nov 2010 at 14:08 by Jay Moore
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Projects: SCaRAB, STREAM, SYSTERACT, INBioPharm
Institutions: SINTEF, Norwegian University of Science and Technology
Expertise: Bioinformatics, Microarray analysis, Data analysis, Pseudomonas, Streptomyces, Stoichiometric modelling, Prokaryotic genetics, Analytical chemistry
Tools: Transcriptomics, Perl, Fermentation, GC and LC analysis of metabolites, Pathway Tools, MS imaging, Mass spectrometry (LC-MS/MS), Mass spectrometry, FT-ICR-MS, Field Flow Fractionation
Senior Research Scientist at SINTEF, Dept. of Biotechnology and Nanomedicine, Research Group Mass Spectrometry
Projects: STREAM, SCaRAB, WineSys, INBioPharm
Institutions: SINTEF, Norwegian University of Science and Technology
Expertise: Metabolomics
Projects: STREAM, SCaRAB, INBioPharm, SYSTERACT
Institutions: SINTEF
Projects: STREAM
Institutions: University of Warwick
Systems Biologist specialising in data integration, high-throughput sequence analysis, and evolutionary and comparative analyses.
Projects: STREAM, SYSTERACT, INBioPharm, BioZEment 2.0, OXYMOD, BESTER, AquaHealth (ERA-BlueBio)
Institutions: SINTEF
https://orcid.org/0000-0002-9420-1959SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".
The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.
Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...
Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep
Web page: http://sysmo.net/
Global metabolic switching in Streptomyces coelicolor
Antibiotics are made during the second phase of growth when there is a transition in metabolism from primary to secondary metabolism. Primary metabolism is growth related and involves all the normal cellular activities associated with cell growth and division. Whereas secondary metabolism is non-growth linked and is non-essential but many important activities occur during this phase which help the bacterium survive.
Programme: SysMO
Public web page: Not specified
Organisms: Streptomyces coelicolor
All creators
Antibiotics are made during the second phase of growth when there is a transition in metabolism from primary to secondary metabolism. Primary metabolism is growth related and involves all the normal cellular activities associated with cell growth and division. Whereas secondary metabolism is non-growth linked and is non-essential but many important activities occur during this phase which help the bacterium survive.
One of these activities is antibiotic production and is widespread in streptomycetes ...
Submitter: Jay Moore
Studies: ScoCyc metabolic pathway curation, Timeseries 1
Assays: Metabolic pathway curation, Online/offline measurements, metabolomics, proteomics, transcriptomics
Snapshots: No snapshots
All creators
Genotype: Wildtype (M145E) Medium: Phosphate-limited (F134)
Submitter: Jay Moore
Investigation: Metabolism of Streptomyces coelicolor (SysMO ST...
Assays: Online/offline measurements, metabolomics, proteomics, transcriptomics
Snapshots: No snapshots
Submitter: Jay Moore
Assay type: Metabolite Profiling
Technology type: Gas Chromatography Mass Spectrometry
Investigation: Metabolism of Streptomyces coelicolor (SysMO ST...
Study: Timeseries 1
Organisms: Streptomyces coelicolor : M145 (wild-type / wild-type)
SOPs: MCF derivatization, Metabolome extraction, Spore batch generation
Data files: 1 hidden item
Snapshots: No snapshots