SOPs

What is a SOP?

460 SOPs visible to you, out of a total of 753

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P.SHA-230410-V1_How_to_NextSeq2000_10X.docx

MetNet

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: BCG vaccination induces antibacterial effector ...

Assays: Short Read Sequencing - Data Linked

Download

Created: 4th Mar 2026 at 15:52, Last updated: 4th Mar 2026 at 21:21

P.SES-260107-V1_mass-flow-cyto-MM.docx

Hi-IMPAcTB

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: BCG vaccination induces antibacterial effector ...

Assays: Flow Cytometry - Data Linked, Mass Cytometry - Data Linked

Download

Created: 4th Mar 2026 at 15:53, Last updated: 4th Mar 2026 at 16:10

P.SES-260107-V1_scRNAseq-MM.docx

Hi-IMPAcTB

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: BCG vaccination induces antibacterial effector ...

Assays: Library Creation - Metadata, Short Read Sequencing - Data Linked, Single Cell Expression Analysis - Data Linked

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Created: 4th Mar 2026 at 15:53, Last updated: 4th Mar 2026 at 16:10

P.SES-260107-V1_Quantification&Analysis-MM.docx

Hi-IMPAcTB

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: BCG vaccination induces antibacterial effector ...

Assays: FCS Analysis - Data Linked

Download

Created: 4th Mar 2026 at 15:53, Last updated: 4th Mar 2026 at 16:08

P.SES-221109-V1_CG000330_Chromium_Next_GEM_Single_Cell_5-v2_Cell_Surface_Protein_UserGuide_RevD.pdf

Hi-IMPAcTB

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: BCG vaccination induces antibacterial effector ...

Assays: Library Creation - Metadata

Download

Created: 4th Mar 2026 at 15:52, Last updated: 4th Mar 2026 at 16:08

P.SES-260107-V1_HumanSamples-SOP.docx

Hi-IMPAcTB

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: BCG vaccination induces antibacterial effector ...

Assays: Patient Visit - Metadata, Tissue Collection - Metadata

Download

Created: 4th Mar 2026 at 15:52, Last updated: 4th Mar 2026 at 16:07

SOP MRI Control group

Quantifizierung des Zusammenhanges zwischen Leberperfusion und -funktion bei erweiterter Leberresektion - Ein systemmedizinischer Ansatz (QuaLiPerF)

SOP for the Control Group animals undergoing MRI

Creators: Karl-Heinz Herrmann, Uta Dahmen

Submitter: Karl-Heinz Herrmann

Investigations: P6: MRI assessment of liver function, perfusion...

Studies: Control Group and 1 hidden item

Assays: MRI Session Control Group and 1 hidden item

Created: 22nd Jan 2026 at 10:16

ISA structure for the Digital Salmon

GenoSysFat, DigiSal

We have adapted the definitions of terms in ISA best practice and programmes and projects:

Programme = Overarching research theme (The Digital Salmon)
Project = Research grant (DigiSal, GenoSysFat)
Investigation = a particular biological process, phenomenon or thing \ (typically corresponds to [plans for] one or more closely related papers)

...

Creators: Jon Olav Vik, Natalie Stanford

Submitter: Jon Olav Vik

DOI: 10.15490/fairdomhub.1.sop.250.1

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

External Link

Created: 12th Apr 2016 at 12:29, Last updated: 19th Jan 2026 at 07:49

P.KAM-250519-V1_EC_Myofibroblast_CytokineELISA.docx

MetNet

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Myofibroblasts reduce angiogenesis and vasculog...

Assays: ELISA - Data Linked, Luminex - Data Linked

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Created: 5th Jan 2026 at 17:13, Last updated: 5th Jan 2026 at 19:50

P.KAM-250519-V2_EC_Myofibroblast_RT-PCR.docx

MetNet

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Myofibroblasts reduce angiogenesis and vasculog...

Assays: RNA Extraction - Metadata, Real Time RT-PCR - Data Linked

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Created: 5th Jan 2026 at 17:15, Last updated: 5th Jan 2026 at 19:50

P.KAM-250519-V2_EC_Myofibroblast_ExperimentalDesign.docx

MetNet

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Myofibroblasts reduce angiogenesis and vasculog...

Assays: Microfluidic Network Formation - Metadata

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Created: 5th Jan 2026 at 17:14, Last updated: 5th Jan 2026 at 19:50

P.KAM-250519-V2_EC_Myofibroblast_Imaging.docx

MetNet

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Myofibroblasts reduce angiogenesis and vasculog...

Assays: Imaging - Data Linked

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Created: 5th Jan 2026 at 17:14, Last updated: 5th Jan 2026 at 19:50

P.KAM-250519-V2_EC_Myofibroblast_Imaging_Analysis.docx

MetNet

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Myofibroblasts reduce angiogenesis and vasculog...

Assays: Imaging Analysis - Data Linked

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Created: 5th Jan 2026 at 17:14, Last updated: 5th Jan 2026 at 19:50

P.KAM-251118-V1_EC_Myofibroblast_IPF.docx

MetNet

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Myofibroblasts reduce angiogenesis and vasculog...

Assays: Microfluidic Network Formation - Metadata

Download

Created: 5th Jan 2026 at 17:14, Last updated: 5th Jan 2026 at 19:50

P.SED-241121-V1_Flow-Cytometry-Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: IFN-γ- GranzymeB + Natural killer cells are ind...

Assays: Flow Cytometry - Data Linked, Flow Cytometry Analysis - Data Linked

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Created: 28th Mar 2025 at 18:17, Last updated: 4th Nov 2025 at 14:01

P.SED-241121-V1_Mass-Cytometry-Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: IFN-γ- GranzymeB + Natural killer cells are ind...

Assays: Mass Cytometry - Data Linked, Mass Cytometry Analysis - Data Linked

Download

Created: 28th Mar 2025 at 18:19, Last updated: 4th Nov 2025 at 14:01

P.SED-241121-V1_NHP-Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: IFN-γ- GranzymeB + Natural killer cells are ind...

Assays: Patient Visit - Metadata

Download

Created: 28th Mar 2025 at 17:59, Last updated: 4th Nov 2025 at 14:01

P.SED-241121-V1_Sample-Processing-Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: IFN-γ- GranzymeB + Natural killer cells are ind...

Assays: Patient Visit - Metadata, Tissue Collection - Metadata

Download

Created: 28th Mar 2025 at 18:05, Last updated: 4th Nov 2025 at 14:01

P.ESS-251028-V1_NG_5-RADR.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: DNA adduct and mutational profiles reveal the s...

Assays: RaDR - Data Linked

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Created: 30th Oct 2025 at 15:05, Last updated: 30th Oct 2025 at 16:21

P.ESS-251028-V1_NG_6-DuplexDNA.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: DNA adduct and mutational profiles reveal the s...

Assays: DNA Extraction - Metadata, Library Prep - Metadata, Mutational Spectra Analysis - Data Linked, Short Read Sequencing - Data Linked

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Created: 30th Oct 2025 at 15:06, Last updated: 30th Oct 2025 at 16:21

P.ESS-251028-V1_NG_7-NGS_Analysis

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: DNA adduct and mutational profiles reveal the s...

Assays: Mutational Spectra Analysis - Data Linked

Download

Created: 30th Oct 2025 at 15:06, Last updated: 30th Oct 2025 at 16:21

P.ESS-251028-V1_NG_8-GEX.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: DNA adduct and mutational profiles reveal the s...

Assays: PCR - Data Linked, RNA Extraction - Metadata

Download

Created: 30th Oct 2025 at 15:06, Last updated: 30th Oct 2025 at 16:21

P.ESS-251028-V1_NG_3-DNA_Adducts.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: DNA adduct and mutational profiles reveal the s...

Assays: Mass Spectrometry - Data Linked

Download

Created: 30th Oct 2025 at 15:05, Last updated: 30th Oct 2025 at 16:21

P.ESS-251028-V1_NG_4-GPT.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: DNA adduct and mutational profiles reveal the s...

Assays: GPT Assay - Data Linked

Download

Created: 30th Oct 2025 at 15:05, Last updated: 30th Oct 2025 at 16:21

P.ESS-251028-V1_NG_9-ELISA.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: DNA adduct and mutational profiles reveal the s...

Assays: ELISA - Data Linked

Download

Created: 30th Oct 2025 at 15:06, Last updated: 30th Oct 2025 at 16:21

P.ESS-251028-V1_NG_1-Animals.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: DNA adduct and mutational profiles reveal the s...

Assays: Tissue Collection - Metadata

Download

Created: 30th Oct 2025 at 15:04, Last updated: 30th Oct 2025 at 16:21

P.ESS-251028-V1_NG_2-NDMA.docx

MIT SRP

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: DNA adduct and mutational profiles reveal the s...

Assays: Chemical Challenge - Metadata

Download

Created: 30th Oct 2025 at 15:05, Last updated: 30th Oct 2025 at 16:21

P.FOR-250702-V1_Mouse-lung-tissue-processing-for-barcode-analysis.docx

Hi-IMPAcTB

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Protection against reinfection with Mycobacteri...

Assays: Library Prep - Metadata, Tissue Collection - Metadata

Created: 20th Oct 2025 at 15:09, Last updated: 20th Oct 2025 at 15:10

P.FOR-240116-V1_G2G_LibraryProtocol.docx

Hi-IMPAcTB

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Protection against reinfection with Mycobacteri...

Assays: Bacterial Extraction - Metadata

Created: 20th Oct 2025 at 15:09, Last updated: 20th Oct 2025 at 15:09

P.FLY-251017-V1_G2G_Flow.docx

Hi-IMPAcTB

No description specified

Creators: None

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Protection against reinfection with Mycobacteri...

Assays: Flow Cytometry - Data Linked, Flow Cytometry Analysis - Data Linked

Created: 20th Oct 2025 at 15:09, Last updated: 20th Oct 2025 at 15:09

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