Assays

What is an Assay?

73 Assays visible to you, out of a total of 179

DNA sequencing: PRJNA1192411

Sampling vicinity of industrial settings for pathogens and GMO identification

Information about the BioProject submission of all whole-genome-sequenced samples used in this study

Submitter: David Calderón-Franco

Assay type: Metagenomics

Technology type: Illumina HiSeq

Investigation: Sampling vicinity of industrial settings for pa...

Study: Sampling vicinity of industrial settings for pa...

Organisms: No organisms

SOPs: No SOPs

Data files: BioProject and SRA metadata, Metadata: environmental metagenomes

Snapshots: No snapshots

Created: 3rd Dec 2024 at 15:07, Last updated: 3rd Dec 2024 at 15:26

DNA Sequencing

Revisiting mutational resistance to ampicillin and cefotaxime in Haemophilus influenzae

Sequencing of 150 bp paired-end reads on an Illumina NextSeq 500 or 2000

Submitter: Lennart Bartels

Assay type: DNA Sequencing

Technology type: Next generation sequencing

Investigation: Genome-wide association study on ampicillin res...

Study: Genome-wide association study on ampicillin res...

Organisms: No organisms

SOPs: No SOPs

Data files: WGS ENA sbmissions

Snapshots: No snapshots

Created: 9th Aug 2024 at 11:21, Last updated: 18th Nov 2024 at 10:14

Computation of ftsI haplotypes and of haplotype networks with node annotation according to isolates' PBP3 resistance group, MIC, origin, resistance and serotype

Revisiting mutational resistance to ampicillin and cefotaxime in Haemophilus influenzae

No description specified

Submitter: Inken Wohlers

Biological problem addressed: Visualization

Investigation: Haplotype networks for common variants in gene ...

Study: Haplotype network computation using PegasShiny

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: PegasShiny tool, Tab-separated input files for PegasShiny with i..., VCF file of non-synonymous ftsI variants in 247...

Snapshots: No snapshots

Created: 29th Aug 2024 at 15:57, Last updated: 30th Aug 2024 at 10:13

Lineweaver-Burk Kinetics

Glycogen Metabolism in bacteria

No description specified

Submitter: Janette Alford

Assay type: Experimental Assay Type

Technology type: Progressive Curve Experiment

Investigation: Phosphoglucomutase variants in Synechocystis

Study: Enzymatic characterization

Organisms: No organisms

SOPs: No SOPs

Data files: Lineweaver-Burk Kinetic SynPGM1, Lineweaver-Burk Kinetic SynPGM1 S47A

Snapshots: No snapshots

Created: 6th Aug 2024 at 13:40, Last updated: 22nd Aug 2024 at 06:21

IC50 of fructose-1,6-bisphosphate

Glycogen Metabolism in bacteria

No description specified

Submitter: Janette Alford

Assay type: Experimental Assay Type

Technology type: Progressive Curve Experiment

Investigation: Phosphoglucomutase variants in Synechocystis

Study: Enzymatic characterization

Organisms: No organisms

SOPs: No SOPs

Data files: SynPGM1 IC50 of fructose-1,6-bisphosphate

Snapshots: No snapshots

Created: 7th Aug 2024 at 06:31, Last updated: 22nd Aug 2024 at 06:21

EC50 of glucose-1,6-bisphosphate

Glycogen Metabolism in bacteria

No description specified

Submitter: Janette Alford

Assay type: Experimental Assay Type

Technology type: Progressive Curve Experiment

Investigation: Phosphoglucomutase variants in Synechocystis

Study: Enzymatic characterization

Organisms: No organisms

SOPs: No SOPs

Data files: SynPGM1 EC50 of glucose-1,6-bisphosphate

Snapshots: No snapshots

Created: 7th Aug 2024 at 06:42, Last updated: 22nd Aug 2024 at 06:21

Michaelis Menten Kinetics

Glycogen Metabolism in bacteria

No description specified

Submitter: Janette Alford

Assay type: Experimental Assay Type

Technology type: Progressive Curve Experiment

Investigation: Phosphoglucomutase variants in Synechocystis

Study: Enzymatic characterization

Organisms: No organisms

SOPs: No SOPs

Data files: Michaelis-Menten Kinetic SynPGM1, Michaelis-Menten Kinetic SynPGM1 S47A, Michaelis-Menten Kinetic SynPGM1 S47D

Snapshots: No snapshots

Created: 30th Jul 2024 at 08:25, Last updated: 6th Aug 2024 at 13:47

Proteomic data

EbN1 Systems Biology

(Show All)

No description specified

Submitter: Lars Wöhlbrand

Assay type: Protein Identification

Technology type: Liquid Chromatography-tandom Mass Spectrometry

Investigation: Systems biology investigation of aromatic compo...

Study: Experimental multi-OMICS

Organisms: No organisms

SOPs: SOP – Protein preparation, nanoLC-MS/MS analyse...

Data files: Detailed peptide data for identified proteins, Protein identification data

Snapshots: No snapshots

Created: 3rd Jun 2022 at 09:03, Last updated: 11th Apr 2024 at 08:15

Single Cell Expression Matrix Analysis - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-231107-V1_Computational-analyses-of-scRNA...

Data files: samples-publish2023-11-03_A.SCXP.xlsx, samples-publish2023-11-03_D.SEQ.xlsx

Snapshots: No snapshots

Created: 6th Nov 2023 at 19:27, Last updated: 17th Nov 2023 at 21:50

Linear Mixed Model - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.4-Linear-Mixed-Model-for-Prot...

Data files: samples-publish2023-11-03_A.MSP.xlsx, samples-publish2023-11-03_A.SCXP.xlsx

Snapshots: No snapshots

Created: 6th Nov 2023 at 21:47, Last updated: 17th Nov 2023 at 21:50

All Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 17th Nov 2023 at 21:49, Last updated: 17th Nov 2023 at 21:50

All Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 17th Nov 2023 at 21:47, Last updated: 17th Nov 2023 at 21:50

Gene Expression Analysis - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-231107-V1_Bulk-RNAseq-analysis-of-in-vitr...

Data files: samples-publish2023-11-03_A.GEX.xlsx, samples-publish2023-11-03_D.SEQ_CEL.xlsx

Snapshots: No snapshots

Created: 6th Nov 2023 at 19:30, Last updated: 17th Nov 2023 at 21:50

Immunohistochemistry - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.7-Tissue-Sectioning,-Staining...

Data files: samples-publish2023-11-03_AB_IHC.xlsx, samples-publish2023-11-03_D.IMG_IHC.xlsx, samples-publish2023-11-03_TIS.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:48, Last updated: 17th Nov 2023 at 21:45

Mass Spectrometry Proteomics - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.3-Tissue-Preparation-for-Prot...

Data files: samples-publish2023-11-03_D.MSP.xlsx, samples-publish2023-11-03_TIS.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:49, Last updated: 17th Nov 2023 at 21:45

Single Cell Sequencing - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-231101-V1_scRNA_Protocol

Data files: samples-publish2023-11-03_D.SEQ.xlsx, samples-publish2023-11-03_DNA.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 18:31, Last updated: 17th Nov 2023 at 21:45

Mass Spectrometry Proteomics Analysis - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.3-Tissue-Preparation-for-Prot...

Data files: samples-publish2023-11-03_A.MSP.xlsx, samples-publish2023-11-03_D.MSP.xlsx

Snapshots: No snapshots

Created: 6th Nov 2023 at 21:53, Last updated: 17th Nov 2023 at 21:45

Patient Visit - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.1-Study-Approval.docx

Data files: samples-publish2023-11-03_PAT.xlsx, samples-publish2023-11-03_PAV.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:11, Last updated: 17th Nov 2023 at 21:45

Tissue Collection - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.1-Study-Approval.docx, P.GRI-231030-V1_Tissue_Protocol

Data files: samples-publish2023-11-03_PAV.xlsx, samples-publish2023-11-03_TIS.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:27, Last updated: 17th Nov 2023 at 21:45

DNA Extraction - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-231101-V1_scRNA_Protocol

Data files: samples-publish2023-11-03_DNA.xlsx, samples-publish2023-11-03_TIS.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:46, Last updated: 17th Nov 2023 at 21:45

Cell Culture and Organoid Generation - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-231030-V1_Cell_Culture_and_Organoid_Gener...

Data files: samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_TIS.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:44, Last updated: 17th Nov 2023 at 21:20

DNA Extraction - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-231101-V1_RNA-isolation-and-bulk-RNA-seq

Data files: samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_DNA_2.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 15:11, Last updated: 17th Nov 2023 at 21:20

Luminex - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_D.LMX.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 15:11, Last updated: 17th Nov 2023 at 21:20

Elisa - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-231103-V1_ELISA_Luminex_Protocol

Data files: samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_D.ELISA.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 15:13, Last updated: 17th Nov 2023 at 21:20

Cell Culture Imaging - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-231030-V4_Imaging_Protocol

Data files: samples-publish2023-11-03_AB_IMF.xlsx, samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_D.IMG_CCI.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 15:14, Last updated: 17th Nov 2023 at 21:20

Short Read Sequencing - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-231101-V1_RNA-isolation-and-bulk-RNA-seq

Data files: samples-publish2023-11-03_D.SEQ_CEL.xlsx, samples-publish2023-11-03_DNA_2.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 18:29, Last updated: 17th Nov 2023 at 21:20

Patient Visit - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.1-Study-Approval.docx

Data files: samples-publish2023-11-03_PAT.xlsx, samples-publish2023-11-03_PAV.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:08, Last updated: 17th Nov 2023 at 21:20

Tissue Collection - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.1-Study-Approval.docx, P.GRI-231030-V1_Tissue_Protocol

Data files: samples-publish2023-11-03_PAV.xlsx, samples-publish2023-11-03_TIS.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:26, Last updated: 17th Nov 2023 at 21:20

Proteomic analyses

Heat stress response of the red-tide dinoflagellate Prorocentrum cordatum

No description specified

Submitter: Lars Wöhlbrand

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Heat stress response of Prorcentrum cordatum

Study: Heat stress response of Prorocentrum cordatum

Organisms: No organisms

SOPs: No SOPs

Data files: 2D LC MS/MS peptide analyses, Membrane protein enriched fraction, Shotgun proteomic data

Snapshots: No snapshots

Created: 8th Jul 2022 at 13:19, Last updated: 16th Oct 2023 at 09:50

Metabolite analyses

Heat stress response of the red-tide dinoflagellate Prorocentrum cordatum

No description specified

Submitter: Lars Wöhlbrand

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Heat stress response of Prorcentrum cordatum

Study: Heat stress response of Prorocentrum cordatum

Organisms: No organisms

SOPs: No SOPs

Data files: GCMS metabolite data

Snapshots: No snapshots

Created: 8th Jul 2022 at 13:27, Last updated: 16th Oct 2023 at 09:50

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